ASpdb:来自实验和人工智能预测结构的人类蛋白质异型的综合知识库
Yuntao Yang1, Himansu Kumar1, Yuhan Xie2
1McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, 7000 Fannin Street, Suite 600, Houston, TX 77030, USA.
Nucleic acids research
|November 12, 2024
概括
替代拼接产生了多种不同的蛋白质异型. ASpdb是一个新的数据库,提供了对这些异构体的结构洞察力,有助于拼接,结构生物学和疾病的研究.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 生物信息学是一种生物信息学.
背景情况:
- 替代拼接是一种关键的真核细胞过程,从单个基因产生蛋白质多样性.
- 了解拼接对蛋白质结构,相互作用和疾病的影响至关重要.
- 现有的资源可能缺乏对替代拼接异型的全面结构数据.
研究的目的:
- 开发ASpdb,一个集成人类蛋白质异型体的实验和预测结构的数据库.
- 为分析由于替代拼接而导致的结构变化提供资源.
- 促进对替代拼接的功能和疾病影响的研究.
主要方法:
- 综合实验确定的蛋白质结构.
- 纳入了AlphaFold 2对蛋白质异型的预测模型.
- 开发了对结构变化的比较分析和可视化工具.
主要成果:
- ASpdb 含有 >3400 种正规和 >7200 种替代人类蛋白质异型.
- 每个异形都由实验和预测的3D结构来表示.
- 数据库包括拼接事件,序列变化和功能注释.
结论:
- ASpdb为研究结构层面的替代拼接提供了一个独特的资源.
- 该数据库支持结构生物学,蛋白质功能和人类疾病机制的研究.
- 异构体的比较结构分析是ASpdb.
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