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相关概念视频

RNA Stability01:53

RNA Stability

33.3K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.3K
Nucleic Acid Structure01:25

Nucleic Acid Structure

6.0K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
6.0K
Conserved Binding Sites01:49

Conserved Binding Sites

4.2K
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
4.2K
Nucleic Acids02:43

Nucleic Acids

43.7K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
43.7K
Types of RNA01:23

Types of RNA

63.3K
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
63.3K
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K

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相关实验视频

Updated: Jun 7, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

31.4K

使用RNA结构软件包预测保存的RNA结构.

Abhinav Mittal1, Sara E Ali1, David H Mathews1

  • 1Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, New York.

Current protocols
|November 14, 2024
PubMed
概括
此摘要是机器生成的。

使用同源序列预测保存的RNA结构可以提高准确性. 本研究详细介绍了RNA结构套件工具的协议,如TurboFold,Dynalign和Multilign,用于增强非编码RNA结构预测.

关键词:
在RNA折叠热力学,RNA折叠热力学.RNA结构和折叠方式保持RNA结构的保护信息学是一个信息学领域.

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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Analyzing and Building Nucleic Acid Structures with 3DNA
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Analyzing and Building Nucleic Acid Structures with 3DNA

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相关实验视频

Last Updated: Jun 7, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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Analyzing and Building Nucleic Acid Structures with 3DNA
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Analyzing and Building Nucleic Acid Structures with 3DNA

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科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 分子生物学分子生物学

背景情况:

  • 非编码RNAs (ncRNAs) 显示出比序列保护更大的进化结构保护.
  • 从多个同源序列预测保存的RNA结构,比单序列方法提高了准确性.

研究的目的:

  • 提供使用RNA结构套件程序预测保存的ncRNA结构的协议.
  • 概述四个特定的RNA结构程序的优势:多线,TurboFold,Dynalign和PARTS.

主要方法:

  • 使用动态编程算法 (Dynalign, PARTS, Multilign) 进行同时的序列对齐和共同的二次结构识别.
  • 使用TurboFold进行代对齐和保存结构概率估计.
  • 描述网络服务器,命令行和图形用户界面执行的协议.

主要成果:

  • 通过利用来自同源ncRNA序列的保存结构信息,在二次结构预测中证明了更好的准确性.
  • 详细对四个RNA结构程序进行比较分析,强调它们的特定应用和计算方法.

结论:

  • 该RNA结构套件提供了强大的工具来预测保存的ncRNA结构,适用于各种计算平台.
  • 比较分析指导用户选择最适合特定保存RNA结构预测任务的工具.