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The ITS2 Database

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Published on: March 12, 2012

pSATdb 2.0:一个有机细胞常见,多态和独特的微卫星数据库

Sonu Kumar¹, Asheesh Shanker², Dinesh Gupta³

¹Translational Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology, New Delhi, 110067, India.

Functional & integrative genomics

|November 15, 2024

概括

pSATdb 2.0是一个新的数据库,详细介绍了器官基因组中的微卫星 (简单序列重复) 长度变化. 它提供了许多物种中这些多态DNA标记物的全面数据,以帮助遗传研究.

科学领域:

基因组学就是基因组学.
生物信息学是一种生物信息学.
分子生物学分子生物学

背景情况:

微卫星 (简单序列重复,SSR) 是几乎所有基因组中发现的重复性DNA序列.
这些高度多态的序列是生物研究中有价值的分子标记.
目前缺乏关于有机细胞基因组中的微卫星长度变化的全面数据.

研究的目的:

开发一个全面的资源,用于器官基因组中的微卫星信息.
探索和提供各种物种微卫星长度变化的数据.
创建pSATdb 2.0,一个对多态微卫星的升级数据库.

主要方法:

从15681个生物体的细胞器基因组中识别和分析了348,894个微卫星.
从Metazoa和Viridiplantae收集了3252个属的数据.
开发数据库功能,包括高级搜索,BLAST和JBrowse.

主要成果:

pSATdb 2.0提供了关于微卫星频率和在器官基因组中的分布的广泛数据.
该数据库独特地提供了关于常见的,多态的和属特定的微卫星的信息.
包括访问来自不同物种的348,894颗微卫星.

结论:

pSATdb 2.0 作为一个有价值的,全面的资源,用于器官基因组的微卫星数据.
该数据库促进了遗传多样性,绘图和人口研究的研究.
无限制的访问和先进的工具增强了它对科学界的有用性.

关键词:

塑是一种塑.数据库数据库数据库是一个数据库.微卫星是微观卫星中的一个.线粒体中的线粒体.

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