植物代谢网络16:扩大代表性不足的植物群体和实验支持的酶数据
Charles Hawkins1,2, Bo Xue1,2, Farida Yasmin3
1Plant Resilience Institute, Michigan State University, 1066 Bogue St, East Lansing, MI 48824, USA.
Nucleic acids research
|November 18, 2024
概括
植物代谢网络 (PMN) 数据库现在包括155种植物基因组,其最新版本是PMN 16. 这种增强的资源有助于理解植物新陈代谢和分析omics数据.
科学领域:
- 植物生物学 植物生物学
- 代谢学 代谢学 代谢学
- 生物信息学是一种生物信息学.
背景情况:
- 植物代谢网络 (PMN) 是植物代谢的重要在线资源.
- 之前的发布已经将PMN确立为植物科学研究的关键数据库.
研究的目的:
- 发布PMN 16版本,扩大其覆盖范围和数据.
- 增强PMN对OMIC数据分析和教育的实用性.
主要方法:
- 数据库编制和植物代谢数据的策划.
- 实验和计算预测信息的整合.
- 包含具有支持功能的新基因组和酶.
主要成果:
- PMN 16涵盖了155种植物和绿藻基因组,超过1200个通路,超过130万种酶,超过8000种代谢物和超过1万种反应.
- 整合了29个新的基因组,包括非洲孤儿作物和非开花物种.
- 增加了52种具有实验验证功能的新酶.
结论:
- PMN 16代表了植物代谢知识的显著扩展.
- 该数据库作为查询,可视化和分析omics数据的全面工具.
- 植物新陈代谢是植物新陈代谢的宝贵教育资源.
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