在凝聚过程中,无序蛋白质的依赖序列的形状转换在凝聚过程中发生
Jiahui Wang1, Dinesh Sundaravadivelu Devarajan1, Keerthivasan Muthukumar1
1Artie McFerrin Department of Chemical Engineering, Texas A&M University College Station TX 77843 USA jeetain@tamu.edu.
Chemical science
|November 21, 2024
概括
内在无序的蛋白质 (IDP) 形成凝结物. 它们的序列在稀释阶段决定着形状,但在密集阶段变成理想链状,接口结构显示序列依赖.
科学领域:
- 生物物理学的生物物理.
- 蛋白质科学 蛋白质科学
- 分子生物学分子生物学
背景情况:
- 内在无序的蛋白质 (IDP) 经历相分离,形成生物分子凝聚物.
- 这些凝聚物 (密度,稀释和接口相) 中的蛋白质构成对功能至关重要.
- 了解冷凝过程中残留水平的形状变化是具有挑战性的.
研究的目的:
- 为了研究在相隔期间的IDP的依赖序列的构造转换.
- 阐明序列模式如何影响稀释,密集和接口阶段的IDP构造.
- 提供关于国内流离失所者缺乏冷凝物中的二级结构行为的见解.
主要方法:
- 采用粗粒型多聚合物模型,具有可调节的序列模式 (可替换为类似块的).
- 在不同度的蛋白质中进行模拟以观察相位行为.
- 经过验证的发现,自然存在的蛋白序列参与了凝结物形成.
主要成果:
- 序列模式影响了稀释相形状,从理想型到半紧型.
- 密度相形态接近理想的链行为,无论序列.
- 链从寡合集群过渡到密集阶段,单个链膨胀.
- 接口构造表现出强烈的序列依赖性,比大量密集阶段更崩.
结论:
- 在很大程度上,IDP序列模式决定了稀释阶段和接口结构.
- 密集相位的行为显示了朝着理想的链特性趋同.
- 这项工作提供了对生物分子凝聚物中IDP的序列驱动型构造动态的详细见解.
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