聚合的CRISPR屏幕具有联合单核染色体可访问性和转录组概况.
Rachel E Yan1,2,3,4, Alba Corman1,2, Lyla Katgara1,2
1New York Genome Center, New York, NY, USA.
Nature biotechnology
|November 21, 2024
概括
我们开发了MultiPerturb-seq,这是一种新的CRISPR查方法,可以同时测量基因表达和染色质可访问性. 这种方法将ZNHIT1确定为癌症重编程治疗的潜在目标.
科学领域:
- 单细胞基因组学 单细胞基因组学
- 通过CRISPR查进行查.
- 癌症生物学 癌症生物学
背景情况:
- 之前的聚合CRISPR屏幕单独分析了基因表达或染色质可访问性.
- 整合多种单细胞模式是一个技术上的挑战.
研究的目的:
- 开发一个高通量CRISPR查平台,使染色质可访问性,转录组和指导RNA的联合分析成为可能.
- 应用这个平台来确定罕见儿科癌症的治疗点.
主要方法:
- MultiPerturb-seq集成了组合索引和滴滴微流体学.
- 它同时捕获单核染色质可访问性,转录组和指导RNA.
- 这种方法显著缩小了多模式查的吞吐量.
主要成果:
- 我们成功地将三个单细胞模式 (染色质可访问性,转录组,导向RNA) 集成到高通量CRISPR屏幕中.
- 确定了参与细胞分化的关键基因调节者.
- ZNHIT1被确定为癌症重编程的潜在治疗标.
结论:
- MultiPerturb-seq提供了一个强大的新工具,用于多模式的聚合CRISPR查.
- 这些已识别的基因和ZNHIT1为了解和治疗罕见的儿科癌症提供了新的途径.
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