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相关概念视频

Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K
RNA Structure01:23

RNA Structure

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Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
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RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

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Alternative RNA Splicing02:18

Alternative RNA Splicing

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RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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RNA Splicing01:32

RNA Splicing

56.0K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
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相关实验视频

Updated: Jun 6, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

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RNApysoforms:在Python中对RNA异形结构和表达的快速染交互可视化.

Bernardo Aguzzoli Heberle1,2, Madeline L Page1, Emil K Gustavsson3,4

  • 1Sanders-Brown Center on Aging, University of Kentucky, Lexington, KY, USA.

bioRxiv : the preprint server for biology
|November 22, 2024
PubMed
概括
此摘要是机器生成的。

RNApysoforms是一个新的Python包,用于可视化RNA (核糖核酸) 异型及其表达. 它提供交互式,可定制和快速染,用于增强遗传多样性分析.

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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA
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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA

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Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
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相关实验视频

Last Updated: Jun 6, 2025

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RNA Secondary Structure Prediction Using High-throughput SHAPE

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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA
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A Rapid High-throughput Method for Mapping Ribonucleoproteins RNPs on Human pre-mRNA

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Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
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科学领域:

  • 生物信息学是一种生物信息学.
  • 分子生物学分子生物学
  • 计算生物学 计算生物学

背景情况:

  • 替代拼接通过从单个基因中产生多个RNA异型来显著增加遗传多样性,从而影响基因功能.
  • 目前对RNA异形及其表达模式的可视化工具有限,缺乏可编程性,定制性或同时显示结构和表达的能力.

研究的目的:

  • 开发一种新的基于Python的包,RNApysoforms,用于同时可视化RNA异形结构和表达数据.
  • 通过提供交互式,可定制和高效的可视化框架来解决现有工具的局限性.

主要方法:

  • 开发了RNApysoforms作为一个Python包,使用plotly进行交互式可视化和Polar进行高效的数据处理.
  • 设计了包装,使RNA异形结构及其相应的表达水平能够同时显示.

主要成果:

  • RNApysoforms提供了一个可编程和可定制的框架,用于可视化RNA异型和表达数据.
  • 与现有解决方案相比,该软件包提供更快的染速度,并且适合集成到Web应用程序中.

结论:

  • RNApysoforms通过提供卓越的可视化工具来增强RNA异形研究的分析和传播.
  • 该包克服了当前基因组浏览器和可视化软件的关键局限性,促进了对遗传多样性的更深入的理解.