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RNA Structure01:19

RNA Structure

4.7K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.7K
Nucleic Acid Structure01:25

Nucleic Acid Structure

5.9K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
5.9K
Translational Regulation01:29

Translational Regulation

1
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
1
Leaky Scanning02:28

Leaky Scanning

5.1K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.1K
Nucleic Acids02:43

Nucleic Acids

43.7K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
43.7K
Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

3.7K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.7K

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相关实验视频

Updated: Jun 6, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

31.4K

RNADiffFold:使用离散扩散模型进行生成性RNA二次结构预测.

Zhen Wang1, Yizhen Feng1,2, Qingwen Tian1,3

  • 1Hangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou 310018, Zhejiang, China.

Briefings in bioinformatics
|November 24, 2024
PubMed
概括

RNADiffFold引入了一种新的生成方法,用于使用多项扩散来预测RNA二次结构. 这种方法从噪声中提炼了接触地图,提供了具有竞争力的RNA结构的动态视图.

关键词:
预测RNA的二次结构深度学习是一种深度学习.离散扩散模型的离散扩散模型.

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

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相关实验视频

Last Updated: Jun 6, 2025

RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

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科学领域:

  • 分子生物学分子生物学
  • 计算生物学 计算生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 核糖核酸 (RNA) 分子是具有多种生物功能的关键宏分子.
  • 准确预测RNA二次结构对于理解它们的3D架构和功能至关重要.
  • 现有的方法往往提供静态预测,并需要严格的先前约束.

研究的目的:

  • 介绍RNADiffFold,一种用于RNA二次结构预测的新型生成方法.
  • 为了利用多项扩散模型来改进RNA接触地图.
  • 开发一种条件化机制,使用序列特征来准确生成结构.

主要方法:

  • 重新构思联系地图预测作为像素智能细分.
  • 训练一个无声化模型,从噪音状态逐步完善联系地图.
  • 采用一种使用一热编码序列,概率图和RNA基础模型嵌入的条件化机制.

主要成果:

  • RNADiffFold在家族内部和跨家族数据集上展示了与最先进的方法相比具有竞争力的性能.
  • 该模型显示了在捕捉RNA结构的动态方面的能力.
  • 在包含多个RNA构造的数据集上观察到有效的性能.

结论:

  • RNADiffFold为RNA二次结构预测提供了一种创新的生成方法.
  • 该方法成功地集成了序列信息,以指导结构生成.
  • RNADiffFold通过提供对RNA结构动态性质的见解来推动该领域的进步.