在A组轮状病毒中使用G基因型 (VP7) 的宿主和结构特异性编码
Ziwei Liu1, Simiao Zhao1, Xinshun Jin1
1School of Tropical Agriculture and Forestry, Hainan University, Haikou, China.
Frontiers in veterinary science
|November 25, 2024
概括
罗塔病毒A (RVA) 显示了宿主特定的密码子使用偏差,主要是由自然选择驱动的. 这种病毒适应,特别是在VP7蛋白中.
科学领域:
- 病毒学 病毒学
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- 罗塔病毒A (RVA) 感染了广泛的宿主,使其进化动态对了解疾病传播至关重要.
- 研究病毒适应性进化的研究提供了对宿主级进化优势的见解.
- 病毒密码子使用中的宿主特异性是调查的关键领域.
研究的目的:
- 为了确定在罗塔病毒A.中是否存在codon使用的宿主特异性.
- 分析宿主特异性G基因型VP7.7的代使用偏差 (CUB).
- 阐明VP7.7的分子动态进化模式和适应性进化.
主要方法:
- 在MEGA X.中使用Clustal W进行序列对齐.
- 通过最大概率方法构建家族遗传树.
- 使用Codon W和EMBOSS软件进行Codon使用偏差分析.
主要成果:
- 在人类和其他物种之间观察到罗塔病毒A VP7的CUB显著差异.
- 自然选择被确定为这种密码体使用偏差的主要驱动因素.
- VP7蛋白的β-桶结构域表现出更强的CUB.
结论:
- 罗塔病毒A表现出宿主特定的密码子使用偏差,主要受到自然选择的影响.
- 这种偏差在VP7蛋白中尤为明显,影响了病毒的进化.
- 研究结果提供了对RVA进化动态,跨物种传播和病毒与宿主适应性的见解.
相关概念视频
Retroviruses
12.2K
Retroviruses and retrotransposons both insert copies of their genetic elements into the genome of the host cell. Thus, the viral genes are passed on when the host genome is replicated or translated. A typical retroviral DNA sequence contains 3-4 genes that encode the different proteins required for its structural assembly and function as a molecular parasite. This DNA is transcribed into a single mRNA, which is very similar in structure to conventional mRNAs, i.e., it is capped at the 5’...
12.2K
Viruses with RNA Genomes
3
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
3
Retrovirus Life Cycles
45.7K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
45.7K
Leaky Scanning
5.1K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.1K


