克隆血统和基因多样性分析对抗体重和轻链的配对抗体
Ahmed S Fahad1,2, Matías F Gutiérrez-Gonzalez1,2, Bharat Madan1
1The Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, Massachusetts 02139, USA.
本研究引入了一种高通量测序计算管道,用于分析配对抗体变量重 (VH) 和变量轻 (VL) 序列. 这种方法提供了免疫多样性的全面概况,有助于抗体的发现.
科学领域:
- 免疫学 免疫学 免疫学
- 生物信息学是一种生物信息学.
- 基因组学就是基因组学.
背景情况:
- 抗体对适应性免疫至关重要,其特征是独特的可变重 (VH) 和可变轻 (VL) 链.
- 描述完整的抗体谱系需要分析配对的VH:VL序列.
研究的目的:
- 描述一种高吞吐量测序 (HTS) 计算管道,用于分析配对的VH:VL抗体序列.
- 为了使免疫多样性景观的全面分析,并促进抗体的发现.
主要方法:
- 使用了Illumina MiSeq 2 × 300-bp的测序数据.
- 开发了一个HTS计算管道,集成多个生物信息学工具.
- 分析了配对的VH:VL基因谱的数据.
主要成果:
- 该管道允许对完整的功能性抗体反应进行大规模分析.
- 获得了免疫多样性的全面概况,包括基因使用,抗体同型和克隆血统.
- 促进了对VH:VL基因库数据的灵活分析.
结论:
- 描述的HTS计算管道对于分析配对VH:VL抗体序列是有效的.
- 该协议支持有效的抗体发现和免疫多样性的详细表征.
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