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MicroRNAs01:22

MicroRNAs

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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
3.0K
pre-mRNA Processing02:01

pre-mRNA Processing

52.6K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
52.6K
siRNA - Small Interfering RNAs02:30

siRNA - Small Interfering RNAs

16.6K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.6K
RNA Interference01:23

RNA Interference

25.9K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
25.9K
Small interfering RNAs (siRNA)02:30

Small interfering RNAs (siRNA)

3.5K
3.5K
Pre-mRNA Processing: Modification of pre-mRNA Ends01:35

Pre-mRNA Processing: Modification of pre-mRNA Ends

9.2K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
9.2K

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相关实验视频

Updated: Jun 6, 2025

A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants
06:34

A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants

Published on: January 21, 2020

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描述使用变异自动编码器生成前体微RNA的生成.

Marko Petković1,2, Vlado Menkovski2,3

  • 1Department of Applied Physics and Science Education, Eindhoven University of Technology, 5612AZ Eindhoven, The Netherlands.

Entropy (Basel, Switzerland)
|November 27, 2024
PubMed
概括

这项研究引入了一种新的机器学习框架,使用变异自编码器 (VAE) 来识别微RNA (miRNA) 基因. 该方法提供了前体miRNA (pre-miRNA) 结构的可解释描述,改善了与疾病相关的基因识别.

关键词:
描述 生成 描述 生成生成型模型是一种生成型模型.可以解释的解释性.这是一个微型RNA.

更多相关视频

mirMachine: A One-Stop Shop for Plant miRNA Annotation
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mirMachine: A One-Stop Shop for Plant miRNA Annotation

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Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy
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Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy

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相关实验视频

Last Updated: Jun 6, 2025

A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants
06:34

A Bioinformatics Pipeline to Accurately and Efficiently Analyze the MicroRNA Transcriptomes in Plants

Published on: January 21, 2020

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mirMachine: A One-Stop Shop for Plant miRNA Annotation
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mirMachine: A One-Stop Shop for Plant miRNA Annotation

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Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy
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Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy

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科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学

背景情况:

  • 微RNA (miRNA) 是关键的非编码RNA,调节基因表达,涉及癌症等疾病.
  • 准确识别前体miRNA (pre-miRNA) 基因组对于了解疾病机制至关重要.
  • 目前用于预miRNA检测的实验方法昂贵而复杂.

研究的目的:

  • 开发一种新的计算框架,用于识别 pre-miRNA.
  • 为预miRNA结构描述创建可解释的机器学习模型.
  • 为了提高miRNA基因识别和分类的准确性和效率.

主要方法:

  • 使用变异自编码器 (VAE) 进行生成建模,以发现前-miRNA的潜在生成因子.
  • 开发了一个决策树分类器,用于从VAE获得的低维潜空间.
  • 将框架应用于miRNA分类任务.

主要成果:

  • 在建模前-miRNA中取得了高的重建性能.
  • 在miRNA识别中表现出高分类性能.
  • 产生了一个准确和可解释的结构描述的前-miRNA.

结论:

  • 拟议的基于VAE的框架为预miRNA识别提供了一种有效和可解释的方法.
  • 这种方法增强了对miRNA基因调节及其与疾病相关性的理解.
  • 该框架为计算生物学和基因组研究提供了有价值的工具.