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Updated: Jun 16, 2026

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在Litopenaeus vannamei中优化全基因组复序深度,以实现高通量SNP基因定型

Pengfei Lin1,2,3, Yang Yu1,2,3, Zhenning Bao1,2,3

  • 1Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China.

International journal of molecular sciences
|November 27, 2024
PubMed
概括

优化全基因组复序深度对于水产养殖中精确的遗传研究至关重要. 对于综合性研究,建议使用10×的深度,而6×为人口分析提供了具有成本效益的平衡.

关键词:
利托佩内亚斯 (Litopenaeus vannamei) 是一个水族群.在SNP的数量和质量方面,SNP的数量和质量.测序深度的测序 测序深度的测序进行全基因组再测序.

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A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
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Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...