通过全基因组关联研究识别单个核酸多态性,研究肉中的pH特征
Haiwei Wang1, Zhuping Chen1, Lin Ma1
1Chongqing Engineering Research Center of Goose Genetic Improvement, Institute of Poultry Science, Chongqing Academy of Animal Science, Chongqing 402460, China.
Biology
|November 27, 2024
概括
本研究使用全基因组关联研究来确定肉pH的遗传标记. 这些发现为通过选择性繁殖改善肉质量提供了分子工具.
科学领域:
- 动物遗传学动物遗传学
- 基因组学就是基因组学.
- 肉类科学 肉科学
背景情况:
- 肉质量的遗传调节,特别是pH值,基本上是未知的.
- 了解这些遗传因素对于改善肉质和育种计划至关重要.
研究的目的:
- 确定与四川白肉pH相关的候选基因和基因组区域.
- 为提高肉质量提供分子标记物.
主要方法:
- 在203只四川白身上进行了全基因组关联研究 (GWAS) 和单核酸多态 (SNP) 基因定型.
- 使用高通量测序和MALDI-TOF基因定型来分析遗传数据并验证发现.
- 进行了基因注释和基因本体学 (GO) 丰富分析.
主要成果:
- GWAS确定了30个与17号和13号染色体上的肉类pH值相关的SNP.
- 他们确定了9个候选基因,包括C19L2,AMFR,POL,RERGL,ZN484,GMDS和WAC.
- 相关的SNP在与免疫反应和代谢过程相关的途径中得到了丰富.
结论:
- 这项研究阐明了影响肉pH的基因调节途径.
- 已识别的遗传标记可以用于分子育种,以提高的肉质.
更多相关视频
05:53Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
10.1K
11:35Screening for Functional Non-coding Genetic Variants Using Electrophoretic Mobility Shift Assay EMSA and DNA-affinity Precipitation Assay DAPA
Published on: August 21, 2016
12.9K
相关概念视频
Genome-wide Association Studies-GWAS
12.5K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
12.5K
Single Nucleotide Polymorphisms-SNPs
14.0K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
14.0K
Comparing Copy Number Variations and SNPs
17.3K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
17.3K
Background and Environment Affect Phenotype
6.5K
Although the genetic makeup of an organism plays a major role in determining the phenotype, there are also several environmental factors, such as temperature, oxygen availability, presence of mutagens, that can alter an organism’s phenotype.
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
6.5K
