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相关概念视频

Chromatin Packaging01:32

Chromatin Packaging

16.6K
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
16.6K
Nucleosome Remodeling02:54

Nucleosome Remodeling

9.0K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.0K
Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

5.4K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
5.4K
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

8.2K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
8.2K
Polytene Chromosomes02:04

Polytene Chromosomes

10.0K
Polytene chromosomes are giant interphase chromosomes with several DNA strands placed side by side. They were discovered in the year 1881 by Balbiani in salivary glands, intestine, muscles, malpighian tubules, and hypoderm of larvae Chironomus plumosus. Hence, these are also called "Salivary gland chromosomes." These are found in insects of the order Diptera and Collembola; in certain organs of mammals; and synergids, antipodes of flowering plants. Polytene chromosomes are also...
10.0K
Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

6.2K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.2K

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相关实验视频

Updated: Jun 6, 2025

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

Published on: May 6, 2010

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通过聚合物物理学对染色体结构的多层次视角.

Francesca Vercellone1, Andrea M Chiariello2, Andrea Esposito2

  • 1Dipartimento di Ingegneria Chimica dei Materiali e della Produzione Industriale-DICMaPI,11, Università degli Studi di Napoli Federico II and INFN Napoli, Naples, Italy.

Physiology (Bethesda, Md.)
|November 27, 2024
PubMed
概括

计算模型解释了染色体折叠如何影响基因表达和疾病. 这些基于物理学的方法可以预测相互作用,并揭示SARS-CoV-2感染等疾病的分子原因.

关键词:
这就是SARS-CoV-2病毒.染色体的架构 染色体的架构多尺度建模模型的使用.聚合物物理学 聚合物物理学结构变体 结构变体

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相关实验视频

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科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 生物物理学的生物物理.

背景情况:

  • 染色体的空间组织对于基因表达和细胞功能至关重要.
  • 染色体结构的破坏与各种疾病有关.
  • 像Hi-C和显微镜这样的先进技术揭示了复杂的色素相互作用.

研究的目的:

  • 为了证明基于物理的计算模型对染色体结构的全基因组应用.
  • 突出这些模型对染色质接触和分子决定因素的预测能力.
  • 为了解染色体折叠与疾病相关的变化提供一个框架.

主要方法:

  • 使用基于物理的计算模型,包括聚合物相位分离和循环挤出机制.
  • 将这些模型应用于全基因组数据,以预测染色质接触.
  • 整合实验数据与计算预测.

主要成果:

  • 模型成功地预测了多个尺度上的染色质接触.
  • 这些模型阐明了染色体组织的潜在分子决定因素.
  • 证明了在疾病背景下解释染色体折叠的改变的能力.

结论:

  • 基于物理学的模型是理解染色体结构的强大工具.
  • 这些模型为与染色质破坏有关的疾病的分子基础提供了洞察力.
  • 计算方法提高了我们对染色质在健康和疾病中的作用的理解.