负链RNA病毒的转录梯度表明一种共同的RNA转录机制
bioRxiv : the preprint server for biology
|November 28, 2024
概括
一个新的模型解释了使用聚合酶过程性和基因重叠的非细分负链RNA病毒 (NNSV) 转录梯度. 这允许从基因型预测NNSV行为,用于生物医学应用.
科学领域:
- 病毒学 病毒学
- 分子生物学分子生物学
- 基因组学就是基因组学.
背景情况:
- 目前的非细分负链RNA病毒 (NNSV) 转录模型侧重于跨基因区域的聚合酶行为.
- 这些模型不能完全解释NNSV基因组内观察到的转录梯度.
研究的目的:
- 为NNSV转录引入一种新的,简化的模型.
- 阐明NNSV中转录梯度的主要驱动因素.
- 为了能够根据遗传信息预测NNSV转录行为.
主要方法:
- 开发一种病毒聚合酶活性的双参数模型.
- 分析聚合酶过程性及其与基因组长度的相关性.
- 包括基因重叠作为转录衰减的一个因素.
主要成果:
- 该模型将大多数表达差异归因于聚合酶过程性.
- 转录衰减进一步通过重叠基因的存在来解释.
- 确定了聚合酶过程性和病毒基因组长度之间的直接相关性.
- 在基因组的3'端的聚合酶输入与模型发现相一致.
结论:
- 拟议的模型只使用基因型准确预测NNSV转录模式.
- 这种预测能力彻底改变了用于生物医学目的的NNSV变体的设计.
- 该模型为理解NNSV基因表达调节提供了根本性的进步.
相关概念视频
Viruses with RNA Genomes
3
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
3
siRNA - Small Interfering RNAs
16.6K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
16.6K
Bacterial Transcription
28.0K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
28.0K
Types of RNA
5.6K
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
RNA Performs Diverse...
5.6K
Retrovirus Life Cycles
45.7K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
45.7K
RNA Interference
25.9K
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
25.9K


