与癌症相关的SF3B1突变K700E导致U2/分支点识别的广泛变化,而不会改变拼接
Andrey Damianov1, Chia-Ho Lin1, Jian Zhang2
1Department of Microbiology, Immunology, and Molecular Genetics, Molecular Biology Institute, David Geffen School of Medicine, UCLA, Los Angeles, CA.
bioRxiv : the preprint server for biology
|November 28, 2024
概括
在癌症中常见的SF3B1突变破坏了结合体的功能. 这项研究揭示了K700E突变如何导致广泛的不精确的分支部位识别,影响拼接调节.
科学领域:
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
- 癌症生物学 癌症生物学
背景情况:
- 一种U2 snRNP蛋白SF3B1的突变与骨髓质疏松综合征和其他癌症有关.
- 在SF3B1中K700E突变破坏了与SUGP1的相互作用,导致异常的拼接部位激活.
研究的目的:
- 调查SF3B1 K700E突变对使用U2 IP-seq.的分支站点 (BS) 识别的影响.
- 了解这种突变如何影响白血病细胞中的结合体功能和基因表达.
主要方法:
- 应用U2 IP-seq来描述跨转录组的分支站点结合.
- 对携带SF3B1 K700E突变的K562白血病细胞的分析.
主要成果:
- 鉴定了与由K700E突变激活的神秘3'拼接位相关的转移分支部位.
- 发现了成千上万的额外变化在分支站点绑定,通常在自然站点附近,而不会改变3'拼接站点选择.
- 观察到新的分支站点表现出更强的U2 snRNA基配对潜力或靠近更强的聚皮里米丁通道.
结论:
- SF3B1 K700E突变导致分支站点识别中的广泛不准确性.
- 3'连接部位选择的有限变化表明,SUGP1在早期分支部位选择中发挥了积极作用.
- 这些发现扩大了对这种致癌性SF3B1突变的生理后果的理解.
相关概念视频
Long-patch Base Excision Repair
7.0K
Since the discovery of the two BER pathways, there has been a debate about how a cell chooses one pathway over the other and the factors determining this selection. Numerous in vitro experiments have pointed out multiple determinants for the sub-pathway selection. These are:
7.0K
Base-pairing and DNA Repair
64.6K
64.6K
Base Excision Repair
22.0K
One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
The first step of...
22.0K
RNA Splicing
56.0K
Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.0K
Mismatch Repair
4.8K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
4.8K
Nucleotide Excision Repair
3.4K
DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
3.4K


