整个染色体层次的基因组为危鱼Percocypris pingi的进化和保护提供了资源和见解
Zhi He1, Chunxia Li1, Kuo Gao1
1College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
BMC genomics
|December 3, 2024
概括
这项研究介绍了危鱼Percoypris pingi的第一个染色体级基因组组,这对于理解其低遗传多样性至关重要. 新的基因组资源将有助于制定有效的保护策略,以保护P. pingi种群.
科学领域:
- 基因组学就是基因组学.
- 水产养殖是水产养殖的一种方式.
- 保护生物学 保护生物学
背景情况:
- 鱼 (Percoypris pingi) 是中国的一个临灭绝的鱼类,遗传多样性较低.
- 迫切需要基因组资源来指导保护策略和胚胎细胞保存.
- 之前对P. pingi的全基因组数据是没有的.
研究的目的:
- 为了构建第一个染色体层次的基因组组合Percoypris pingi.
- 为保护和生物研究提供必要的基因组资源.
- 研究P. pingi. 的遗传多样性和进化史.
主要方法:
- 高通量染色体形状捕获 (Hi-C) 技术.
- 巴克生物长读数测序.
- 基因组组装和注释. 基因组组装和注释.
- 遗传学分析. 遗传学分析.
主要成果:
- 为P. pingi生成了1.7Gb的染色体级基因组组合.
- 证实P. pingi是一种具有24型和25型染色体的全四类动物.
- 确定了25,198和25291个蛋白质编码基因,68个独特的基因家族,并选了关键的扩展基因.
结论:
- 这项研究为P. pingi.提供了高质量的参考基因组.
- 该资源将支持遗传,基因组和生物研究.
- 有助于改善基因多样性,种群规模和保护临灭绝的鱼类物种.
相关概念视频
Multi-species Conserved Sequences
3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K
Convergent Evolution
27.5K
Evolution shapes the features of organisms over time, ensuring that they are suited for the environments in which they live. Sometimes, selection pressure leads to the rise of similar but unrelated adaptations in organisms with no recent common ancestors, a process known as convergent evolution.
27.5K
Gene Evolution - Fast or Slow?
7.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.0K
Cis-regulatory Sequences
9.7K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.7K
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Lampbrush Chromosomes
7.8K
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
7.8K


