绘制FF域折叠路径的地图,通过临时拥挤的折叠中间体结构来绘制
Debajyoti De1, Nemika Thapliyal1, Ved Prakash Tiwari1
1Tata Institute of Fundamental Research Hyderabad, Ranga Reddy District, Hyderabad 500046, India.
概括
研究人员使用NMR揭示了短暂蛋白质折叠中间体的原子结构. 这些发现描述了FF域的折叠路径,并表明有序的中间体可以在相关蛋白质中发挥功能作用.
科学领域:
- 生物物理学的生物物理.
- 结构生物学 结构生物学
- 蛋白质动力学 蛋白质动力学
背景情况:
- 蛋白质折叠问题,即了解蛋白质如何实现其原生结构,尽管在结构预测方面取得了进展,但仍然是一个重大挑战.
- 从未折叠状态开始的蛋白质折叠路径的精确原子模型仍然难以捉摸.
研究的目的:
- 为了确定蛋白质折叠过程中短暂形成的中间体的原子分辨率结构.
- 描述人类HYPA/FBP11.11中的71个残留FF域的折叠轨迹.
- 为了评估沿着折叠路径的紧缩程度.
主要方法:
- 化学交换和转移 (CEST) 的NMR实验.
- 一个全面的蛋白质折叠的四态运动模型.
- 作为尿素度的函数,对CEST资料的分析.
主要成果:
- 确定了I2折叠中间体的原子分辨率结构,显示它是有序的和紧的.
- I1中间体是部分无序的,而在速度限制屏障之前形成的I2中间体是有序的和紧的,具有非原生相互作用.
- FF1域的原始状态类似于I2形状,表明有序中间体的功能作用.
结论:
- 该研究阐明了FF领域的折叠轨迹,确定了中间体I1和I2的独特结构.
- 顺序良好的折叠中间体可以在结构相关的蛋白质中功能性地重新使用.
- 描述的用于阐明过渡结构的策略将有助于未来对蛋白质动态学的研究.
相关概念视频
Molecular Chaperones and Protein Folding
17.7K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
17.7K
Protein Folding
7.8K
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
7.8K
Protein Folding Quality Check in the RER
3.7K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.7K
Directing Proteins to the Rough Endoplasmic Reticulum
7.1K
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
7.1K
Post-translational Translocation of Proteins to the RER
5.6K
A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
5.6K
Mitochondrial Protein Sorting
4.2K
Mitochondria are double-membrane organelles of the eukaryotes involved in cellular metabolism, signaling, ATP synthesis, and programmed cell death. Each of these processes requires specific proteins and enzymes that must be correctly sorted to the right mitochondrial subcompartment for the proper functioning of the organelle.
Most of these mitochondrial proteins are encoded by the nucleus and imported to the mitochondria as unfolded or loosely folded precursors. Mitochondrial precursors...
Most of these mitochondrial proteins are encoded by the nucleus and imported to the mitochondria as unfolded or loosely folded precursors. Mitochondrial precursors...
4.2K


