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相关概念视频

Protein Networks02:26

Protein Networks

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An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
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Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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DNA Microarrays02:34

DNA Microarrays

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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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相关实验视频

Updated: Jun 12, 2025

High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions
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使用基于网络的方法识别关键基因的协议,作为差异表达分析的替代方案.

Piyush Agrawal1, Sridhar Hannenhalli2

  • 1Department of Medical Research, SRM Medical College Hospital & Research Centre, SRMIST, Kattankulathur, Chennai, India.

STAR protocols
|December 5, 2024
PubMed
概括

鉴定疾病病因和转录基因变化的关键基因至关重要. 我们的PathExt工具使用基于网络的方法和波纹中心性得分来有效地确定这些关键基因.

关键词:
生物信息学是一种生物信息学.癌症 癌症 癌症 癌症计算机科学 计算机科学基因组学就是基因组学.系统生物学 系统生物学

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科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.
  • 系统生物学 系统生物学

背景情况:

  • 描述参与疾病病因的基因对于理解生物过程至关重要.
  • 全球的转录基因变化通常由关键的调节基因介导.
  • 识别这些基因有助于阐明疾病机制和发现治疗点.

研究的目的:

  • 提出一种用于识别与疾病病因和转录组变化相关的关键基因的协议.
  • 介绍PathExt,这是一个新的基于网络的基因表征工具.
  • 详细介绍 PathExt 用于路径和基因分析的方法.

主要方法:

  • 为安装必要的图书馆实施协议.
  • 在PathExt工具中输入数据的准备指南.
  • 运行PathExt和使用波中心性得分分析结果的详细程序.

主要成果:

  • 成功应用PathExt工具来识别关键基因.
  • 基于网络分析的差异性路径的表征.
  • 使用波纹中心性得分来量化基因重要性.

结论:

  • 该PathExt工具提供了一种有效的基于网络的方法,用于识别生物环境中的关键基因.
  • 该协议促进了对转录基因数据的分析,以了解疾病病因.
  • 波动中心性得分为排名基因重要性提供了强大的指标.