使用SLC传送器进行葡萄糖运输的基于能量的键图模型
Peter J Hunter1, Weiwei Ai1, David P Nickerson1
1Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.
Biophysical journal
|December 7, 2024
概括
本研究介绍了溶液载体 (SLC) 载体的键图建模,确保质量,电荷和能量保存. 这些模型使用实验数据准确地预测了传送器的功能.
科学领域:
- 生物物理学的生物物理.
- 计算生物学 计算生物学
- 膜运输 运输 膜运输
背景情况:
- 溶液载体 (SLC) 超级家族蛋白质促进了小分子在细胞膜上的被动运输.
- 精确的SLC传送器建模对于理解细胞和组织功能至关重要.
- 现有的模型可能无法完全保留诸如质量,电荷和能量之类的基本物理量.
研究的目的:
- 使用键图方法开发SLC传送器的热力学一致模型.
- 用特定细胞和组织类型的实验动力学数据证明这些模型的参数化.
- 从开发的模型中导出和验证分析稳定状态流量表达式.
主要方法:
- 键图方法的应用,用于构建SLC传送器模型.
- 将质量,电荷和能量保存原则纳入模型.
- 使用实验动力学数据,对特定输送器 (SLC2A2,SLC5A1) 进行参数调整.
主要成果:
- 开发用于SLC传送器的键图模型,以节约质量,电荷和能量.
- 从四或六态模型中推导分析稳定状态流量表达式.
- 对SLC2A2和SLC5A1的模型与实验数据进行了成功的参数化和验证.
结论:
- 债券图形建模为创建热力学一致的SLC传送器模型提供了强大的框架.
- 由此衍生的分析表达式准确地表示稳定状态流量,并通过实验数据验证.
- 这种方法为膜运输过程的生物物理分析提供了一个强大的工具.
相关概念视频
Secondary Active Transport
6.8K
One example of how cells use the energy contained in electrochemical gradients is demonstrated by glucose transport into cells. The ion vital to this process is sodium (Na+), which is typically present in higher concentrations extracellularly than in the cytosol. Such a concentration difference is due, in part, to the action of an enzyme "pump" embedded in the cellular membrane that actively expels Na+ from a cell. Importantly, as this pump contributes to the high concentration of...
6.8K
Glucose Transporters
22.5K
Glucose transporters facilitate the transport of glucose across the cell membrane. In addition to glucose, some glucose transporters can also aid the movement of other hexoses such as fructose, mannose, and galactose.
Facilitated diffusion-glucose transporters (GLUTs) are encoded by the solute-linked carrier (SLC) family 2, subfamily A gene family, or SLC2A. The 14 GLUT protein members are distributed into three classes:
Facilitated diffusion-glucose transporters (GLUTs) are encoded by the solute-linked carrier (SLC) family 2, subfamily A gene family, or SLC2A. The 14 GLUT protein members are distributed into three classes:
22.5K
Membrane Proteins
17.9K
Plasma membranes have integral transmembrane proteins involved in facilitated transport. These proteins are collectively referred to as transport proteins, and they function as either channels for the material or as carriers themselves. Channel proteins have hydrophilic domains exposed to the intracellular and extracellular fluids and a hydrophilic channel through their core that provides a hydrated opening for solutes to pass through the membrane layers. Passage through the channel allows...
17.9K
Glucose Absorption Into the Small Intestine
31.3K
Complex carbohydrates consumed cannot be absorbed into the small intestine in their original form. First, they must be hydrolyzed to a monosaccharide form such as glucose or galactose. These monosaccharides are then transported across the intestinal membrane and into the blood via transcellular transport. The intestinal epithelial cells allow the movement of these monosaccharides with a defined 'entry' through membrane transporter proteins present on their apical membrane and...
31.3K
Drug Absorption Mechanism: Carrier-Mediated Membrane Transport
3.5K
Certain large, lipid-insoluble drug molecules that resemble amino acids, peptides, or glucose, require specialized carrier proteins to facilitate their diffusion across cell membranes. This transport can occur through either facilitated diffusion, which does not require energy input, or active transport, which does require energy input.
Facilitated diffusion is a passive process that utilizes human Solute Carrier (SLC) transporters. These transporters bind to the drug, undergo structural...
Facilitated diffusion is a passive process that utilizes human Solute Carrier (SLC) transporters. These transporters bind to the drug, undergo structural...
3.5K
Membrane Transporters
10.3K
Transporters are essential membrane transport proteins with functions related to cell nutrition, homeostasis, communication, etc. Approximately 7% of all genes in the human genome code for transporters or transporter-related proteins.
Transporters are mainly composed of alpha-helices, built from bundles of ten or more helices traversing the plasma membrane. The solute-binding sites are located midway, where some of the helices are broken or distorted, making space for the binding site through...
Transporters are mainly composed of alpha-helices, built from bundles of ten or more helices traversing the plasma membrane. The solute-binding sites are located midway, where some of the helices are broken or distorted, making space for the binding site through...
10.3K


