评估VP4-VP2测序用于人类肠道病毒的分子类型
Kouichi Kitamura1, Minetaro Arita1
1Department of Virology II, National Institute of Infectious Diseases, Musashi-murayama, Tokyo, Japan.
PloS one
|December 10, 2024
概括
这项研究建立了一种标准方法,用于识别使用VP4-pVP2基因组区域的肠病毒和鼻病毒类型. 95%的氨基酸序列值有助于在临床和环境监测中快速诊断.
科学领域:
- 病毒学 病毒学
- 分子生物学分子生物学
- 公共卫生 公共卫生
背景情况:
- 肠病毒和鼻病毒包括300多种不同的类型.
- 目前的检测依赖于针对VP1,VP4和VP4-pVP2区域的RT-PCR.
- 目前还没有基于VP4-pVP2的标准化类型识别方法.
研究的目的:
- 使用VP4-pVP2基因组区域建立用于肠病毒和鼻病毒类型识别的标准化方法.
- 分析VP4-pVP2氨基酸序列分歧,以进行类型歧视.
- 提出一个可靠的标准,用于快速病毒类型.
主要方法:
- 在249种肠道病毒和鼻病毒类型中分析VP4-pVP2氨基酸序列分歧.
- 配对序列比较以确定物种内识别值.
- 蛋白质BLAST使用代表性原型进行搜索,以验证类型标准.
主要成果:
- 确定了95%的氨基酸序列识别值,用于肠道病毒物种内识别.
- 这一门显示,对于类型化大多数肠道病毒原型的高可靠性,有所例外.
- 证实了VP4-pVP2区域的敏感性,以进行高效的临床样本分析.
结论:
- 建议基于VP4-pVP2氨基酸序列的肠道病毒和鼻病毒类型的标准.
- 这种方法有助于在疫情爆发期间快速诊断和例行监测.
- 经过验证的VP4-pVP2值为实验室设置提供了可靠的工具.
更多相关视频
相关概念视频
Viruses with RNA Genomes
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
Human Virome
The human body harbors a vast and diverse viral community known as the human virome. The virome includes bacteriophages that infect bacteria, and eukaryotic viruses that infect human cells. Transient dietary and environmental viruses also contribute to this dynamic ecosystem. Estimates suggest the human body may contain on the order of 10¹³ viral particles, though abundance varies widely by body site and detection method.Comprehensive characterization of the virome has become possible only with...
Bacteriophages of the Human Virome
Bacteriophages are found throughout the human body. They may even outnumber eukaryotic viruses, forming an important and dynamic component of the human virome. Indeed, phages represent the most abundant viral entities, with densities in the gut reaching up to 10⁹ particles per gram of fecal matter, and many belonging to orders such as Caudovirales and Microviridae, while a substantial proportion remains unclassified as viral “dark matter.”Lysogeny and Genetic ExchangeIn the gut, bacteriophages...
Rapid Identification of Pathogens
MALDI-TOF MS has transformed clinical microbiology by offering a rapid and reliable method for pathogen identification. The traditional approach to microbial identification typically involves time-consuming culture techniques and biochemical tests, which can delay the initiation of appropriate antimicrobial therapy. MALDI-TOF MS avoids these delays by using characteristic ribosomal protein mass patterns of microbial cells, enabling accurate species-level identification within minutes.Principle...
Poliomyelitis
Poliomyelitis is caused by poliovirus, a small, non-enveloped, positive-sense RNA virus of the Picornaviridae family and Enterovirus genus. Transmission occurs primarily via the fecal-oral route, often through ingestion of contaminated water or food. The virus initially replicates in the oropharynx and intestinal mucosa, particularly in lymphoid tissues such as the tonsils, Peyer’s patches, and regional lymph nodes. Primary viremia follows, allowing dissemination throughout the body.In most...


