评估药物开发计划中使用的计算方法的精度
Manal A Nael1,2, Mohammed M Ghoneim3, Mansour Almuqbil4
1Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Tanta University, Tanta, Egypt.
Journal of biomolecular structure & dynamics
|December 11, 2024
概括
这项研究验证了对缺乏晶体结构的药物发现目标的同质模型,在蛋白质模型和结合点预测中实现了接近本源的准确性,以有效识别.
科学领域:
- 计算化学是一种计算化学.
- 结构生物学是结构生物学.
- 药物发现 药物发现
背景情况:
- 对于没有已知的晶体结构的目标,药物开发具有挑战性.
- 同质模型提供了一种可行的方法,可以从氨基酸序列生成蛋白质模型.
- 这包括验证,药物口袋检测和标识.
研究的目的:
- 为了对药物发现目标的同质模型进行基准测试.
- 为了验证生成的同质模型和预测的绑定口袋的准确性.
- 通过改进的对接策略来增强连接体结合亲和力预测.
主要方法:
- 使用类固醇结合蛋白的氨基酸序列生成的同质模型.
- 通过与X射线晶体结构 (RMSD < 0.6 Å) 的比较来验证模型.
- 采用了三种方法来检测可用药的腔体,并在对接后的优化中结合了.
主要成果:
- 同性学模型显示了可靠的结果,与X射线结构密切匹配.
- 检测到类似于晶体结构中的可用药物口袋.
- 通过使用全面的结合能量函数实现了近原生姿势预测.
结论:
- 同质模型是药物发现目标缺乏晶体结构的可靠方法.
- 可以准确预测结合口袋和连接体结合亲和力.
- 开发的计算方法提高了药物开发早期阶段的效率.
相关概念视频
Data Validation
142
Method validation is a crucial process in analytical chemistry designed to confirm that a given method consistently produces reliable and high-quality results. This process is essential when a method is applied to different sample matrices or when procedural modifications are made, ensuring that the results meet acceptable standards across various applications.
Key parameters for method validation include:
Key parameters for method validation include:
142
Uncertainty in Measurement: Accuracy and Precision
73.4K
Scientists typically make repeated measurements of a quantity to ensure the quality of their findings and to evaluate both the precision and the accuracy of their results. Measurements are said to be precise if they yield very similar results when repeated in the same manner. A measurement is considered accurate if it yields a result that is very close to the true or the accepted value. Precise values agree with each other; accurate values agree with a true value.
73.4K
Drug Discovery: Overview
7.5K
Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
7.5K
Preclinical Development: Overview
4.2K
Preclinical development consists of a series of tests that ensure the safety and efficacy of a new therapeutic compound before it is tested in humans. There are four main phases to this process. First, safety pharmacology tests are conducted to ensure the drug does not produce any acutely harmful effects. These tests examine parameters such as bronchoconstriction, cardiac dysrhythmias, blood pressure changes, and ataxia. Next, preliminary toxicological testing is performed to determine the...
4.2K
Fundamental Mathematical Principles in Pharmacokinetics: Mathematical Expressions and Units
534
Mathematical principles play a crucial role in pharmacokinetics, providing a framework for understanding and quantifying drug distribution and elimination dynamics in the body. By utilizing mathematical expressions and units, pharmacologists can accurately characterize the behavior of drugs, optimize dosing regimens, and predict therapeutic outcomes.
One significant application of mathematics in pharmacokinetics is the characterization of drug distribution through the volume of distribution...
One significant application of mathematics in pharmacokinetics is the characterization of drug distribution through the volume of distribution...
534
Analysis of Population Pharmacokinetic Data
232
Analysis of population pharmacokinetic data involves studying the behavior of drugs within diverse populations to understand their pharmacokinetic parameters. Traditional pharmacokinetic methods typically involve collecting samples from a few individuals and estimating these parameters. While these methods are commonly used, they have limitations in capturing the variability in drug response among individuals or heterogeneous populations. Population pharmacokinetics is employed to address these...
232


