快速预测依赖构造的DFT级别描述符,使用图形神经网络对碳酸和氨酸进行预测
Brittany C Haas1, Melissa A Hardy1, Shree Sowndarya S V2
1Department of Chemistry, University of Utah Salt Lake City Utah 84112 USA matt.sigman@utah.edu.
概括
这项研究使用图形神经网络开发了分子描述器的预测模型,使反应发现速度更快. 这些模型准确地预测了新型化合物的特性,加速了数据驱动的化学开发.
科学领域:
- 计算化学的计算化学
- 机器学习在化学中的应用
背景情况:
- 数据驱动的反应发现依赖于分子描述符,但描述符计算在计算上昂贵,特别是对于灵活的分子.
- 预计算描述函数库可以减少计算负担,但对新的描述函数进行预测,即时的假设结构是理想的.
研究的目的:
- 为密度函数理论 (DFT) 级分子描述器开发准确和高效的预测模型.
- 为了能够即时预测碳酸和氨酸的构造组合的描述符.
主要方法:
- 为8528个碳酸和8172个氨酸生成了DFT级描述器库.
- 在这些库中训练有素的2D和3D图形神经网络架构.
- 使用医学相关化合物的外部数据集和胺合反应的回顾性研究验证的预测模型.
主要成果:
- 为分子级,键级和原子级描述器开发了强大的预测模型.
- 证明了对新型碳酸和氨酸的高准确性预测.
- 证实了预测描述符对于下游应用 (如反应速率相关性) 的适用性.
结论:
- 开发的模型通过实现快速,高准确度的描述器预测,显著提高了数据驱动反应开发的可访问性.
- 这种方法加快了对潜在基质的评估,促进了更快的发现和化学反应的优化.
相关概念视频
Predicting Molecular Geometry
34.1K
VSEPR Theory for Determination of Electron Pair Geometries
34.1K
Structures of Carboxylic Acid Derivatives
2.4K
Structure of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the...
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the...
2.4K
IR and UV–Vis Spectroscopy of Carboxylic Acids
3.8K
In IR spectroscopy of carboxylic acids, the C=O bond shows a characteristic band between 1710 and 1760 cm⁻¹, and the O–H bond exhibits a broad band between 2500 and 3300 cm⁻¹.
However, the stretching absorptions for the C=O bond vary depending on the structure of carboxylic acids. The C=O bond of the free carboxylic acids shows a higher stretching frequency, 1760 cm−1, while H-bonded carboxylic acids (dimers) exhibit stretching absorptions at a lower frequency,...
However, the stretching absorptions for the C=O bond vary depending on the structure of carboxylic acids. The C=O bond of the free carboxylic acids shows a higher stretching frequency, 1760 cm−1, while H-bonded carboxylic acids (dimers) exhibit stretching absorptions at a lower frequency,...
3.8K
Spectroscopy of Carboxylic Acid Derivatives
2.2K
Infrared spectroscopy is primarily used to determine the types of bonds and functional groups. In carboxylic acid derivatives, a typical carbonyl bond absorption is observed around 1650–1850 cm−1. For esters, the absorption is recorded at around 1740 cm−1, while acid halides show the absorption at about 1800 cm−1. Another acid derivative, the acid anhydrides, exhibit two carbonyl absorption around 1760 cm−1 and 1820 cm−1, arising from the symmetrical and...
2.2K
Physical Properties of Carboxylic Acid Derivatives
2.5K
Intermolecular forces dictate several physical properties such as boiling points, melting points, solubilities, and so forth. They are classified into four types: ionic forces, hydrogen bonds, dipole–dipole forces, and dispersion forces. Ionic forces are the strongest, while dispersion forces are the weakest.
Among the carboxylic acid derivatives, the boiling points of acid chlorides and esters are very similar and are the lowest in the series. Acid anhydrides have slightly higher boiling...
Among the carboxylic acid derivatives, the boiling points of acid chlorides and esters are very similar and are the lowest in the series. Acid anhydrides have slightly higher boiling...
2.5K
NMR and Mass Spectroscopy of Carboxylic Acids
3.7K
In ¹H NMR spectroscopy, acidic protons (–COOH) of carboxylic acids are highly deshielded and absorb far downfield, at around 9–12 ppm. The chemical shift value depends on the concentration and solvent used.
While α protons of carboxylic acids absorb at 2–2.5 ppm, β protons absorb further upfield.
Carboxylic acids are easily identified by dissolving them in deuterium oxide, which results in a rapid exchange of the acidic protons with deuterium. This leads to the...
While α protons of carboxylic acids absorb at 2–2.5 ppm, β protons absorb further upfield.
Carboxylic acids are easily identified by dissolving them in deuterium oxide, which results in a rapid exchange of the acidic protons with deuterium. This leads to the...
3.7K


