非洲豆基因组的染色体尺度组合
Bernice Waweru1,2, Isaac Njaci1,3, Rajneesh Paliwal4
1International Livestock Research Institute, P.O. Box 30709, Nairobi, 00100, Kenya.
Scientific data
|December 18, 2024
概括
非洲豆的基因组资源稀缺,阻碍了作物改进. 这项研究首次展示了非洲豆的高质量基因组组,这是提高这种利用不足的作物的重要一步.
科学领域:
- 基因组学就是基因组学.
- 植物育种 植物育种
- 非洲农业 非洲农业
背景情况:
- 基因组学知情的育种对于开发适应气候变化的,营养丰富的非洲作物至关重要.
- 有限的基因组资源阻碍了对非洲土著作物如非洲豆的先进育种工具的应用.
- 解决非洲的粮食和营养不安全问题需要改善未充分利用的当地作物品种.
研究的目的:
- 为了组装一个高质量的,染色体规模的非洲豆 (Sphenostylis stenocarpa) 的基因组.
- 为基因研究和本土非洲豆类作物作物改进提供必要的基因组资源.
- 为了促进现代基因组辅助育种技术的使用,非洲豆.
主要方法:
- 染色体规模的基因组组装使用纳米孔测序和Hi-C支架.
- 使用纳米孔RNASeq和蛋白质同质学的基因预测和注释.
- 将遗传标记固定在新组装的基因组上.
主要成果:
- 制造了一种高质量的染色体规模的非洲豆基因组组合,N50为69.5Mbp.
- 预测和注释了31,614个假定的蛋白质编码基因.
- 基因组组件显著改善了现有的遗传标记的定,验证了它的实用性.
结论:
- 基因组组装代表了非洲豆遗传研究的重大进步.
- 这一资源将加速非洲豆的基因组信息化育种工作.
- 它支持改进品种的开发,以加强非洲的粮食安全和气候弹性.
相关概念视频
Genome Annotation and Assembly
18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
Chromatin Packaging
16.6K
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
16.6K
Assembly of Complex Microtubule Structures
1.8K
Complex microtubule structures are present in resting cells and in dividing cells. In resting cells, they are responsible for maintaining the cellular architecture, tracks for intracellular transport, positioning of organelles, assembly of cilia and flagella. They mediate the bipolar spindle assembly for chromosomal segregation and positioning of the cell division plate in dividing cells. The formation of microtubule complex structures depends on the cell type, cell stage, and cell function.
1.8K
Chromosome Structure
22.6K
A functional eukaryotic chromosome must contain three elements: a centromere, telomeres, and numerous origins of replication.
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
22.6K
Genomic DNA in Eukaryotes
46.6K
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
46.6K
Histone Variants at the Centromere
4.3K
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
4.3K


