鱼Gar (Atractosteus spatula) 的染色体尺度基因组组和基因注释
Qing Wang1,2, Qianqian Yu1,3, Xiangqian Dong1
1Key Laboratory of Wetland Ecology and Environment & Heilongjiang Xingkai Lake Wetland Ecosystem National Observation and Research Station, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China.
Scientific data
|December 18, 2024
概括
研究人员为鱼 (Atractosteus spatula) 生成了一种高质量的染色体级基因组. 这种有价值的基因组资源有助于理解功能基因组学和管理入侵物种种群.
科学领域:
- 基因组学就是基因组学.
- 生态生态学 生态生态学
- 进化生物学 进化生物学
背景情况:
- 鱼 (Atractosteus spatula) 具有特征,使其成为潜在的破坏性入侵物种.
- 以前的基因组草案缺乏深入分析所需的连续性和完整性.
研究的目的:
- 为了组装一个高质量的,染色体水平的鱼基因组.
- 为功能基因组学,进化研究和人口管理提供基础资源.
主要方法:
- 使用牛津纳米孔技术进行测序.
- 在基因组组装中使用染色体相互作用映射 (Hi-C).
- 组装了一个具有高度连续性和完整性的染色体级基因组.
主要成果:
- 组装的鱼基因组是1.05Gb,其支架N50为56.8Mb.
- 98.26%的基被在28个伪染色体上,达到96.7%的完整性.
- 预测了19103个编码蛋白质的基因,其中99.83%具有预测功能.
结论:
- 在染色体层面的基因组Atractosteus脚是一个显著的进步.
- 该资源促进了对物种功能基因组学,染色体进化和种群动态的研究.
- 了解鱼基因组对于管理其作为潜在入侵物种的生态影响至关重要.
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