千年规模的微生物组分析显示,尽管有现代的选择压力,古代的抗微生物耐药性仍然存在
Sankaranarayanan Gomathinayagam1, Swathi Kanagalingam1, Srimathi Chandrasekaran2
1Department of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, 632014, India.
Environmental microbiome
|December 19, 2024
概括
古老的永久土含有多种抗微生物耐药性基因 (ARG),早于抗生素使用. 这些古老的ARG表现出与现代ARG相似的功能,表明耐药性的长期微生物进化.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 进化生物学 进化生物学
背景情况:
- 抗菌素耐药性 (AMR) 是一个重要的全球健康问题.
- 抗菌素耐药性早于抗生素的临床使用,这表明其起源很古老.
- 这项研究调查了古代永久土微生物组中的AMR基因.
研究的目的:
- 在古老的永久土样本中描述抗微生物耐药性基因 (ARG).
- 将古代ARG与当代环境中发现的ARG进行比较.
- 了解ARGs的进化历史和选择压力.
主要方法:
- 古代永久土样本的元基因组测序 (年龄高达110万年).
- 组装元基因组结合物和识别ARG.
- 与数据库对抗ARG流行率和序列识别的比较分析.
- dN/dS分析以评估对ARG的选择压力.
主要成果:
- 在古老的永久土中确定了各种ARG,与现代样本相比.
- 在西伯利亚永久土中,Actinomycetota,Bacillota和热友生物是关键的ARG载体.
- 古代ARG显示出40-60%与已知的抗性基因相同,有净化选择的证据.
- 在359个来自古代微生物组的假定病毒中没有发现ARG.
结论:
- 抗微生物耐药性是微生物的一个古老的进化特征.
- 古代永久土中ARG的功能类别类似于抗生素时代的功能类别.
- 古代永久土中的病毒似乎不含ARG.
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