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相关概念视频

Protein Diffusion in the Membrane01:24

Protein Diffusion in the Membrane

4.3K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.3K
Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

2.1K
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
2.1K
Diffusion01:12

Diffusion

188.0K
Diffusion is the passive movement of substances down their concentration gradients—requiring no expenditure of cellular energy. Substances, such as molecules or ions, diffuse from an area of high concentration to an area of low concentration in the cytosol or across membranes. Eventually, the concentration will even out, with the substance moving randomly but causing no net change in concentration. Such a state is called dynamic equilibrium, which is essential for maintaining overall...
188.0K
Facilitated Diffusion01:16

Facilitated Diffusion

293
The plasma membrane, a critical structure in cellular biology, houses an array of transporters, or carrier proteins, interspersed within its lipid bilayer. These proteins play a crucial role in solute transport through facilitated diffusion, a form of passive diffusion that uses transporters to move the molecules across the membrane.
In this process, substrates such as organic compounds and ions interact with a transporter on one side, triggering conformational changes in proteins that enable...
293
Passive Diffusion: Overview and Kinetics01:17

Passive Diffusion: Overview and Kinetics

397
Passive diffusion is a critical process that allows small lipophilic drugs to cross the cell membrane along a concentration gradient. This mechanism's efficiency depends on four primary factors: the membrane's surface area, the drug's lipid-water partition coefficient, the concentration gradient, and the membrane's thickness.
When administered orally, drugs establish a substantial concentration gradient between the gastrointestinal (GI) lumen and the bloodstream, expediting...
397
Ligand Binding Sites02:40

Ligand Binding Sites

12.7K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.7K

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相关实验视频

Updated: Jun 4, 2025

Planar Gradient Diffusion System to Investigate Chemotaxis in a 3D Collagen Matrix
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Planar Gradient Diffusion System to Investigate Chemotaxis in a 3D Collagen Matrix

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DiffBP:用于蛋白结合的3D分子的生成扩散.

Haitao Lin1,2, Yufei Huang1,2, Odin Zhang1

  • 1Zhejiang University Hangzhou 310058 Zhejiang China tingjunhou@zju.edu.cn.

Chemical science
|December 23, 2024
PubMed
概括
此摘要是机器生成的。

本研究介绍了DiffBP,这是一种用于生成与蛋白质结合的3D分子的新型扩散模型. 它克服了以前方法的局限性,通过考虑全球原子相互作用来改进药物发现.

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Generation of High-Throughput Three-Dimensional Tumor Spheroids for Drug Screening
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Generation of High-Throughput Three-Dimensional Tumor Spheroids for Drug Screening

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Mapping Molecular Diffusion in the Plasma Membrane by Multiple-Target Tracing MTT
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Mapping Molecular Diffusion in the Plasma Membrane by Multiple-Target Tracing MTT

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相关实验视频

Last Updated: Jun 4, 2025

Planar Gradient Diffusion System to Investigate Chemotaxis in a 3D Collagen Matrix
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Planar Gradient Diffusion System to Investigate Chemotaxis in a 3D Collagen Matrix

Published on: June 12, 2015

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Generation of High-Throughput Three-Dimensional Tumor Spheroids for Drug Screening
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科学领域:

  • 计算化学是一种计算化学.
  • 药物发现 药物发现
  • 结构生物学是结构生物学.

背景情况:

  • 产生具有特定蛋白质结合能力的分子对于药物发现至关重要,但仍然是一个重大挑战.
  • 现有的自回归方法产生分子原子对原子,经常违反物理规则,因为它们的顺序性质,并忽视全球原子相互作用.

研究的目的:

  • 开发一种非自回归的生成模型,DiffBP,用于创建与标蛋白结合的3D分子结构.
  • 为了利用蛋白质结合点作为制约因素来产生具有有利性质的分子.

主要方法:

  • DiffBP使用具有等价网络的生成扩散模型来识别元素类型和分子的3D坐标.
  • 该模型以非自身回归的方式运行,同时考虑整个分子及其与蛋白质结合部位的相互作用.

主要成果:

  • 与现有方法相比,DiffBP在产生具有高蛋白亲和度的分子方面表现出了竞争力.
  • 生成的分子具有适当的大小和有利的药物样性,解决了先前方法的局限性.

结论:

  • DiffBP为de novo分子生成提供了一个有前途的非自动回归方法,通过整合全球原子相互作用来改进序列方法.
  • 该模型能够产生具有理想性质的高亲和度结合剂,这在基于结构的药物设计领域取得了进展.