关于Mef2-介导的染色质环的全面预测,这些环可能通过阻断低亲和度结合位来抑制ubx结合
1Developmental Biology, Heidelberg University, COS, 69120 Heidelberg, Germany.
Journal of developmental biology
|December 27, 2024
概括
肌肉分化因子Mef2阻止早期的霍克斯因子结合,作为肌肉发育的定时器. 这项研究揭示了Mef2 .
科学领域:
- 分子生物学分子生物学
- 遗传学 遗传学 是一个
- 发展生物学 发展生物学
背景情况:
- 基因调节涉及转录因子 (TFs) 形成染色质环,以进行增强剂-促进剂相互作用.
- 研究一直专注于基因激活,但抑制机制对于细胞稳定至关重要.
研究的目的:
- 研究Mef2在防止早期霍克斯因子结合中的作用.
- 了解Mef2在定时肌肉分化事件中的功能.
主要方法:
- 对Mef2和Ubx (Hox因子) 的公共全基因组结合数据的分析.
- 在Mef2突变细胞中利用Capture-C相互作用和ATAC-seq.
- 在集成数据集上采用计算方法.
主要成果:
- Mef2形成染色质环,连接到具有低亲和力Ubx位点的Ubx结合区域.
- 染色体结构独立于Mef2的功能.
- 高的Ubx水平可能会破坏循环,从而实现特定的目标调节.
结论:
- Mef2作为Hox因子结合的新型抑制剂.
- 表明Mef2可以作为调节肌肉分化的定时计时器.
- 突出了整合公共数据集的力量,以实现可靠的生物预测.
相关概念视频
Eukaryotic Transcription Inhibitors
9.7K
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
9.7K
Master Transcription Regulators
6.7K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.7K
Heterochromatin
9.0K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
9.0K
Spreading of Chromatin Modifications
8.1K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
8.1K
Inheritance of Chromatin Structures
6.1K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.1K
Nucleosome Remodeling
8.8K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
8.8K


