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相关概念视频

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Olefin Metathesis Polymerization: Ring-Opening Metathesis Polymerization (ROMP)01:16

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Ring-opening metathesis polymerization or ROMP involves strained cycloalkenes as starting materials. The mechanism of ROMP proceeds by reacting cycloalkene with Grubbs catalyst to give metallacyclobutane intermediate which undergoes a ring-opening reaction to form new carbene. The new carbene reacts with another molecule of cycloalkene. Repetition of these steps leads to the formation of an unsaturated open-chain polymer product. All these steps are reversible, however, relieving the ring...
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Polymers02:34

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Real Time RT-PCR

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Real-time reverse transcription-polymerase chain reaction, or Real-time RT-PCR, is an analytical tool used to determine the expression level of target genes. The method involves converting mRNA to complementary DNA with the help of an enzyme known as reverse transcriptase, followed by the PCR amplification of the cDNA. These two processes can be performed simultaneously in a single tube or separately as a two-step reaction.
The real-time quantification of the number of amplified products is...
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相关实验视频

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Protomix:一个用于H-NMR代谢学数据预处理的Python包.

Mohammed Zniber1, Youssef Fatihi2, Tan-Phat Huynh1

  • 1Laboratory of Molecular Science and Engineering, Åbo Akademi University, Henrikinkatu 2, Turku 20500, Finland.

Bioinformatics advances
|December 30, 2024
PubMed
概括

Protomix是一个新的Python包,简化了基于NMR的代谢学数据预处理. 它提供自动化工具来简化分析,使研究人员更容易获得复杂的数据.

科学领域:

  • 代谢学 代谢学 代谢学
  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学

背景情况:

  • 基于NMR的代谢学依赖于数据分析的先进技术工具.
  • 在这个领域,Python中存在大量缺乏全面的,用户友好的预处理软件.
  • 有效的数据预处理对于推进代谢学研究至关重要.

研究的目的:

  • 介绍Protomix,这是一个基于NMR的新型Python代谢组件.
  • 提供自动化,高效和用户友好的信号预处理功能.
  • 为了弥合可用的Python工具中的缺口,用于代谢学数据处理.

主要方法:

  • 开发一个Python包,Protomix,用于代谢学数据预处理.
  • 实现自动化信号预处理步骤.
  • 包括数据提取,预处理和交互式可视化功能.
  • 创建一个1D 1H-NMR数据分析的Jupyter笔记本教程.

主要成果:

  • Protomix提供了一个全面的预处理管道,与各种数据分析工具兼容.
  • 该包简化了代谢学研究中的预处理阶段.
  • 一个教程展示了对前列腺癌和良性前列腺增生的1D 1H-NMR数据的分析.

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结论:

  • 在NMR代谢学中,Protomix解决了对可访问和高效的预处理工具的需求.
  • 该包增强了代谢学数据分析工作流程的可用性.
  • Protomix可以通过GitHub和全面的文档获得.