细菌转录因子TetRR的高度崎而又可航行的监管景观
Cauã Antunes Westmann1,2, Leander Goldbach1,2, Andreas Wagner3,4,5
1Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, Zurich, CH-8057, Switzerland.
Nature communications
|December 31, 2024
概括
绘制转录因子结合部位 (TFBS) 适应性景观的地图揭示了进化途径. 细菌TFBS景观崎但可航行,为基因调节进化提供了洞察力.
科学领域:
- 进化生物学是进化的生物学.
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
背景情况:
- 转录因子结合点 (TFBS) 对于进化创新至关重要.
- 绘制TFBS适应性景观的地图有助于理解序列空间导航.
- 与真核生物相比,细菌TFBS景观的理解较少.
研究的目的:
- 开发和应用一种体内测试,用于绘制细菌TFBS适应性景观的地图.
- 为了分析TetR抑制器TFBSs的景观.
- 调查这些景观的崎性和进化性可访问性.
主要方法:
- 开发一个体内大规模并行记者测定.
- 对17765个TFBS的转录抑制强度的量化.
- 分析突变相互作用和景观峰的进化性可访问性.
主要成果:
- 泰特尔TFBS景观非常崎,有2092个山峰.
- 经常观察到突变之间的非添加性 (表观性) 相互作用.
- 尽管崎,高峰是通过多个突变路径进化可访问的.
- 进化结果是不可预测的,并且取决于路径.
结论:
- 细菌TFBS适应性景观是可航行的,但比真核生物更坚固.
- 这项研究提供了一种 prokaryotic 基因调节器的 TFBS 景观的详细地图.
- 了解TFBS景观的坚固性是预测进化轨迹的关键.
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