病毒感染后3D基因组组织中的结构特异性丧失是由聚合物物理学预测的
Andrea Fontana1, Simona Bianco1, Fabrizio Tafuri1
1Dipartimento di Fisica, Università degli Studi di Napoli Federico II, and INFN Napoli, Complesso Universitario di Monte Sant'Angelo, 80126 Naples, Italy.
The Journal of chemical physics
|January 2, 2025
概括
SARS-CoV-2 感染改变了宿主基因组的 3D 结构,增加了染色质的可变性. 这种结构特异性的损失可能会影响基因调节,影响抗病毒和炎症反应.
科学领域:
- 基因组学就是基因组学.
- 结构生物学 结构生物学
- 计算生物学 计算生物学
背景情况:
- 病毒可以改变宿主表观基因组和染色质组织.
- SARS-CoV-2 感染通过影响 3D 染色体结构的物理机制影响宿主细胞基因活性.
研究的目的:
- 在SARS-CoV-2感染期间使用聚合物物理研究宿主基因组重组.
- 分析感染对单细胞染色体配置变异性的影响.
- 检查对参与宿主防御和炎症的特定基因的影响.
主要方法:
- 利用已发表的Hi-C数据和分子动力学模拟.
- 构建了用于控制和感染细胞的3D染色质配置的集合.
- 专注于拓关联域 (TAD) 和特定基因位置 (DDX58,IL6).
- 应用于聚合物配置的集群分析.
主要成果:
- 感染SARS-CoV-2导致单细胞染色体配置的结构变异性增加.
- 受感染的细胞表现出3D染色体结构的更多异质群体.
- 在感染条件下观察到染色质结构特异性的丧失.
结论:
- 病毒感染破坏了正常的染色体组织,导致结构异质性增加.
- 这种干扰可能会损害宿主细胞基因的精确调节,包括抗病毒和炎症通路中的基因.
- 研究结果表明,病毒诱导的染色质变化与改变宿主基因表达之间存在联系.
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