截然不同的类型的层相关域是由压制性质子甲基化不同模式定义的
Caden J Martin1, Prabakaran Nagarajan1, Elizabeth A Oser1
1Department of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA.
bioRxiv : the preprint server for biology
|January 7, 2025
概括
膜相关域 (LADs) 是多样化的,由特定的基因组修饰定义的三个不同的组. 这项研究揭示了LAD及其边界的独特特征,突出了复杂的基因组组织.
科学领域:
- 基因组学就是基因组学.
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 细胞生物学 细胞生物学
背景情况:
- 膜相关域 (LADs) 对于基因组组织和基因调节至关重要.
- 低发达国家与核边缘地区互动,被认为是压制性地区.
- 之前的研究表明,LADs内部存在显著的异质性.
研究的目的:
- 调查LADs的结构和监管多样性.
- 描述LADs中的关键基因组和表观遗传特征.
- 根据其分子特征对LAD进行分类.
主要方法:
- 拉敏B1和HP1β的分析,以及特定的组织蛋白修饰 (H3K9me3,H3K9me2,H3K27me3,H3K14ac,H3K27ac,H3K9ac).
- 来自单一小鼠群的MEF细胞系的分析.
- 基于特征丰富度和分布的LAD集群.
主要成果:
- 根据基因组蛋白修饰概况,LADs被分为三个不同的组.
- 每组都有一个独特的异染色素标记 (H3K9me3,H3K9me2或H3K27me3).
- 在LAD边界确定了独特的特征,包括H3K14ac缩.
结论:
- 土地管理局在结构和监管方面表现出显著的多样性.
- 质子修饰在LAD染色体调节和核膜协会中起着关键作用.
- 这些发现揭示了核外围基因组组织的复杂性.
相关概念视频
Heterochromatin
10.6K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
10.6K
Histone Modification
13.0K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
13.0K
Spreading of Chromatin Modifications
8.2K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
8.2K
Inheritance of Chromatin Structures
6.2K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
6.2K
Euchromatin
6.8K
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
6.8K
The Nucleosome Core Particle
862
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
862


