大量的细菌DNA和蛋白质在常见的饮食中 蛋白质来源 用于微生物组研究
Alexandria Bartlett1,2, J Alfredo Blakeley-Ruiz1, Tanner Richie1
1Department of Plant and Microbial Biology, North Carolina State University, Raleigh NC.
bioRxiv : the preprint server for biology
|January 7, 2025
概括
使用定义饮食的微生物组研究可能会被微生物DNA和蛋白质污染所混,特别是在基于素的饮食中. 评估饮食成分对于准确的微生物组研究至关重要.
科学领域:
- 微生物学 微生物学
- 营养科学 营养科学
- 生物信息学是一种生物信息学.
背景情况:
- 饮食显著影响肠道微生物群.
- 含有纯化成分的定义饮食对于研究饮食与微生物群相互作用至关重要.
- 定义饮食中常见的蛋白质来源素可能含有微生物DNA,可能会影响研究结果.
研究的目的:
- 在基于素的定义饮食中识别和量化微生物DNA和蛋白质污染物.
- 评估不同蛋白质来源的其他定义饮食中的微生物蛋白质污染.
- 评估饮食衍生微生物蛋白对微生物组研究的影响,使用metaproteomics.
主要方法:
- 使用元基因组和元蛋白组分析来检测微生物DNA和蛋白质.
- 另外还测试了6种含有纯化蛋白质来源的定义饮食.
- 来自无菌和传统殖民小鼠的便样本被分析为饮食后的消费.
主要成果:
- 在基于素的定义饮食中发现了微生物DNA和蛋白质污染物.
- 在测试的饮食中,发现微生物蛋白质污染是素的独特特征.
- 在小鼠便样本中检测到来自饮食的微生物蛋白质,证明其对微生物组研究的贡献.
结论:
- 基于素的定义饮食可以在微生物组研究中引入混的微生物DNA和蛋白质.
- 其他经过测试的纯化蛋白质来源没有显示微生物蛋白质污染.
- 研究人员必须考虑和评估微生物污染物的饮食成分,以确保饮食微生物群研究的有效性.
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