STIPS算法可以追踪迷宫状的模式,并揭示了actin微的独特节奏动态
Rajasekaran Bhavna1, Mahendra Sonawane1
1Department of Biological Sciences, Tata Institute of Fundamental Research, Colaba, Mumbai 400005, India.
Physical biology
|January 9, 2025
概括
一个新的算法跟踪生物聚合物网络动态在活体组织. 它揭示了节奏细胞脉冲模式,这对于维持组织结构和功能至关重要.
科学领域:
- 生物物理学的生物物理.
- 细胞生物学 细胞生物学
- 软物质物理学 软物质物理学
背景情况:
- 在活体组织中追踪半灵活的生物聚合物网络是了解它们的机械和动态特性的关键.
- 追踪的挑战来自于像合并和分裂这样的随机事件,导致快速的局部重组.
- 生物聚合物网络动态对于组织和组织功能至关重要.
研究的目的:
- 开发一种用于跟踪复杂生物聚合物网络动态的新算法.
- 为了分析表皮表面上氨酸丰富的微桥的动态.
- 揭示这些网络中模式维护背后的节奏机制.
主要方法:
- 引入像素子集的空间时间信息 (STIPS) 算法.
- STIPS通过创建像素子集来处理随机过渡来链接跨的轨迹.
- 应用STIPS来分析表皮微脊的时间缩短显微镜图像.
主要成果:
- STIPS算法成功地跟踪了具有挑战性的生物聚合物网络动态.
- 在邻近的细胞中发现了两种不同的基于actomyosin的节律动态.
- 一个2 - 6.25分钟的脉动机制控制网络融合/裂变,而细胞区域脉冲显示一个~10分钟的周期.
结论:
- STIPS算法为分析动态生物聚合物网络提供了一个强大的方法.
- 节奏性细胞动态在维持活跃的图灵模式样结构方面发挥着至关重要的作用.
- 了解这些动态,可以深入了解组织组织和机械特性.
相关概念视频
Actin Treadmilling
7.9K
Actin filaments undergo polymerization and depolymerization from either end. The polymerization and depolymerization rates depend on the cytosolic concentration of free G-actins. The polymerization rate is generally higher at the plus or barbed end, while the depolymerization rate is higher at the minus or pointed end. At a steady state, critical concentration describes the concentration of free G-actin monomers at which the polymerization rate at the plus end is equal to that of the...
7.9K
Mechanism of Lamellipodia Formation
2.5K
Cells migrating in response to external stimuli form lamellipodia, which are thin membrane protrusions supported by a mesh of linked, branched, or unbranched actin filaments. These actin filaments interact with myosin motor proteins, creating the dynamic actomyosin complex within the cytoskeleton. Contractility, or the ability to generate contractile stress, is inherent to the actomyosin complex. It helps cells detect the stiffness of the surrounding ECM and exert contractile force for...
2.5K
Generation of Straight or Branched Actin Filaments
2.9K
The straight or branched structure formation of actin filaments is controlled by nucleating proteins such as the formins and Arp2/3 complex. Formin-mediated assembly results in straight filaments, whereas Arp2/3 protein complex-mediated assembly results in branched actin filaments.
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
2.9K
Mechanism of Filopodia Formation
2.3K
Filopodia are thin, actin-rich cellular protrusions that play an important role in many fundamental cellular functions. They vary in their occurrence, length, and positioning in different cell types, suggesting their diverse roles.
Their main function is to guide migrating cells during normal tissue morphogenesis or cancer metastasis by recognizing and making initial contacts with the extracellular matrix. However, they can also act as stationary cell anchors or help to establish communication...
Their main function is to guide migrating cells during normal tissue morphogenesis or cancer metastasis by recognizing and making initial contacts with the extracellular matrix. However, they can also act as stationary cell anchors or help to establish communication...
2.3K
Actin Polymerization and Cell Motility
5.1K
Actin is a family of globular proteins that are highly abundant in eukaryotic cells. It makes up approximately 1-5% of total cell protein concentration. Actin monomers polymerize to form a complex network of polarized filaments, the actin cytoskeleton, that plays a crucial role in many cellular processes, including cell motility, division, endocytosis, and metastasis of cancer cells.
Actin cytoskeleton dynamics can produce pushing, pulling, and resistance forces that help the cell to migrate....
Actin cytoskeleton dynamics can produce pushing, pulling, and resistance forces that help the cell to migrate....
5.1K
Cytoskeletal Coordination in Cell Migration
4.7K
A migrating cell changes its shape during the cyclic events of attachment and detachment from the substratum and repositions the cell organelles correspondingly. These complex events are orchestrated by the dynamic cytoskeletal network comprising actin filaments, intermediate filaments, and microtubules. Cytoskeletal crosstalk — the direct and indirect communication between the different components — is crucial for this coordination. Direct communication involves various linker...
4.7K


