时间尺度和遗传联系解释了防御系统对水平基因转移的可变影响
Yang Liu1, João Botelho1, Jaime Iranzo2,3
1Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), 28223, Madrid, Spain.
Genome research
|January 10, 2025
概括
Prokaryotic 对移动遗传元素 (MGE) 的防御系统与水平基因转移 (HGT) 有着复杂的关系. 它们对HGT的影响往往被共同获得所掩盖,特别是在短的进化时间尺度上.
科学领域:
- 微生物学 微生物学
- 进化生物学 进化生物学
- 基因组学就是基因组学.
背景情况:
- Prokaryotes 使用防御系统来对抗移动遗传元素 (MGE).
- MGEs促进横向基因转移 (HGT),这推动了微生物的适应.
- 防御系统可能会通过限制HGT来阻碍适应.
研究的目的:
- 研究 prokaryotic 防御系统对 HGT 的短期和长期影响.
- 量化防御系统与MGE丰富性之间的关联.
- 评估防御系统对基因增加和损失率的影响.
主要方法:
- 对197种物种进行比较基因组学分析 (196种细菌,1种古菌).
- 基于族系的统计方法,将国防系统与MGE联系起来.
- 在具有和没有防御系统的血统中计算基因增益/损失率.
主要成果:
- 防御系统对HGT的影响是取决于分类和系统,通常在统计学上并不显著.
- 防御系统需要长期的持久性,以显著抑制HGT.
- 短期内,MGE与防务系统的共同采购导致了积极的关联.
结论:
- 防御系统对HGT的抑制作用经常被它们与MGEs的联系掩盖.
- 防御系统的高周转率掩盖了它们对基因组可塑性的影响.
- 基因组移动性和宿主内保留是影响防御系统对基因组进化的关键因素.
相关概念视频
Types of Genetic Transfer Between Organisms
27.0K
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
27.0K
Bacterial Transformation
55.1K
In 1928, bacteriologist Frederick Griffith worked on a vaccine for pneumonia, which is caused by Streptococcus pneumoniae bacteria. Griffith studied two pneumonia strains in mice: one pathogenic and one non-pathogenic. Only the pathogenic strain killed host mice.
Griffith made an unexpected discovery when he killed the pathogenic strain and mixed its remains with the live, non-pathogenic strain. Not only did the mixture kill host mice, but it also contained living pathogenic bacteria that...
Griffith made an unexpected discovery when he killed the pathogenic strain and mixed its remains with the live, non-pathogenic strain. Not only did the mixture kill host mice, but it also contained living pathogenic bacteria that...
55.1K
Gene Flow
34.7K
Gene flow is the transfer of genes among populations, resulting from either the dispersal of gametes or from the migration of individuals.
34.7K
Genome Size and the Evolution of New Genes
7.9K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
7.9K
Overview of Transposition and Recombination
15.2K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.2K
Mutation, Gene Flow, and Genetic Drift
58.0K
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
58.0K


