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相关概念视频

G Protein-coupled Receptors01:15

G Protein-coupled Receptors

11.2K
G Protein-Coupled Receptors or GPCRs are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to sensory stimuli such as light, odors, hormones, cytokines, or neurotransmitters.
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
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G-protein Coupled Receptors01:21

G-protein Coupled Receptors

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G-protein coupled receptors are ligand binding receptors that indirectly affect changes in the cell. The actual receptor is a single polypeptide that transverses the cell membrane seven times creating intracellular and extracellular loops. The extracellular loops create a ligand specific pocket which binds to neurotransmitters or hormones. The intracellular loops holds onto the G-protein.
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Signal Transduction: Overview01:26

Signal Transduction: Overview

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Cells respond to many types of information, often through receptor proteins positioned on the membrane. They respond to chemical signals, such as hormones, neurotransmitters, and other signaling molecules, initiating a series of molecular reactions to produce an appropriate response. This is called signal transduction. Cells also coordinate different responses elicited by the same signaling molecule via mediators, allowing molecular cross-talk.
Typically, signal transduction involves three...
8.2K
Transducer Mechanism: G Protein–Coupled Receptors01:30

Transducer Mechanism: G Protein–Coupled Receptors

1.8K
G Protein–Coupled Receptors (GPCRs) are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to various stimuli. GPCRs regulate critical physiological pathways and are excellent drug targets for treating diseases such as diabetes, cancer, obesity, depression, or Alzheimer's. Nearly 35% of approved drugs implement their therapeutic effects by selectively interacting with specific GPCRs.
GPCRs are also called heptahelical,...
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Overview of Cell Signaling01:23

Overview of Cell Signaling

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Despite the protective membrane that separates a cell from the environment, cells need the ability to detect and respond to environmental changes. Additionally, cells often need to communicate with one another. Unicellular and multicellular organisms use a variety of cell signaling mechanisms to communicate with the environment.
Cells respond to many types of information, often through receptor proteins positioned on the membrane. For example, skin cells respond to and transmit touch...
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Overview of Cell-Matrix Interactions01:24

Overview of Cell-Matrix Interactions

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The extracellular matrix or ECM holds cells together to form a tissue and allows the cells within the tissue to communicate. ECM comprises proteins such as fibronectin, collagen, laminin, etc. The most abundant protein in this space is collagen. Collagen fibers are interwoven with carbohydrate-containing protein molecules called proteoglycans. ECM allows cell migration and provides a structural scaffold at cell adhesion that anchors the cell when the extracellular matrix proteins interact with...
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相关实验视频

Updated: Jun 3, 2025

Detection of Ligand-activated G Protein-coupled Receptor Internalization by Confocal Microscopy
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Detection of Ligand-activated G Protein-coupled Receptor Internalization by Confocal Microscopy

Published on: April 9, 2017

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细胞Msg:图形卷积网络用于联体受体介导的细胞-细胞通信分析.

Hong Xia1, Boya Ji1, Debin Qiao2

  • 1College of Computer Science and Electronic Engineering, Hunan University, Changsha 410082, China.

Briefings in bioinformatics
|January 12, 2025
PubMed
概括

CellMsg是一种新的计算工具,可以识别连接体-受体相互作用 (LRIs),并从单细胞RNA测序数据测量细胞-细胞通信 (CCC) 强度,为研究瘤组织提供了强大的方法.

关键词:
蜂蜂通信 蜂蜂通信图表 卷积网络 卷积网络配体受体相互作用三点估计方法的估计方法.

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Visualizing Surface T-Cell Receptor Dynamics Four-Dimensionally Using Lattice Light-Sheet Microscopy
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High-resolution Spatiotemporal Analysis of Receptor Dynamics by Single-molecule Fluorescence Microscopy
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Visualizing Surface T-Cell Receptor Dynamics Four-Dimensionally Using Lattice Light-Sheet Microscopy
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High-resolution Spatiotemporal Analysis of Receptor Dynamics by Single-molecule Fluorescence Microscopy
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High-resolution Spatiotemporal Analysis of Receptor Dynamics by Single-molecule Fluorescence Microscopy

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科学领域:

  • 计算生物学是一种计算生物学.
  • 基因组学就是基因组学.
  • 癌症研究 癌症研究

背景情况:

  • 细胞-细胞通信 (CCCs) 在瘤组织中至关重要,影响分化,入侵,转移和耐药性.
  • 对于大型数据集来说,推断CCC的传统实验方法是低效的.

研究的目的:

  • 开发一个计算框架,CellMsg,用于有效推断CCCs.
  • 为了确定高可信度联体受体相互作用 (LRIs) 和量化CCC强度.

主要方法:

  • CellMsg使用多式联络功能和图形卷积网络来识别LRI.
  • 它采用三点估计方法,将LRIs和单细胞RNA-seq数据结合起来,以测量CCC强度.
  • 使用基准LRI数据集,交叉验证和分子对接来验证性能.

主要成果:

  • 与现有方法相比,CellMsg准确地识别了高可信度LRIs,其预测性能和稳定性优于现有的方法.
  • 识别的LRI通过分子对接来验证.
  • 对人类黑色素瘤组织的分析揭示了七种细胞类型之间的细胞间交叉声.

结论:

  • CellMsg提供了一个可靠的LRI数据库和一个有效的CCC强度评估方法,用于单细胞RNA-seq数据.
  • 这种计算工具有助于解读生物系统中细胞间通信.
  • CellMsg是公开可用于研究的.