在农业基因组学研究中数据的再利用:挑战和建议
Alenka Hafner1,2, Victoria DeLeo3, Cecilia H Deng4
1Department of Biology, Frear North, Pennsylvania State University, University Park, PA, 16802, US.
GigaScience
|January 13, 2025
概括
农业研究面临着数据再利用的挑战. 本研究确定了数据标准,元数据和可访问性的局限性,并提出了改善农业基因组学数据共享和重复使用的解决方案.
科学领域:
- 农业基因组学 农业基因组学
- 数据科学数据科学数据科学
- 生物信息学是一种生物信息学.
背景情况:
- 数据的再利用对于科学进步至关重要.
- 农业生物数据联盟成立了一个工作组,以应对农业研究中数据再利用的挑战.
研究的目的:
- 确定农业研究中数据再利用的挑战和瓶.
- 提出改善数据再利用的解决方案,特别是在农业基因组学中.
- 培养对农业基因组学和转录基因组学数据再利用的未来的积极看法.
主要方法:
- 对数据标准,元数据,互操作性,所有权,可用性,用户技能,资源和公平性的局限性的定性分析.
- 针对已识别的挑战,以利益相关者为中心的解决方案开发.
- 专注于农业基因组学研究.
主要成果:
- 确定了包括数据标准,元数据缺陷,互操作性问题,数据所有权问题,可用性限制,用户技能差距,资源限制和公平性问题在内的关键限制.
- 为利益相关者提出可行的解决方案,以克服这些障碍.
- 突出了农业基因组学研究中的具体挑战.
结论:
- 解决已识别的局限性对于加强农业数据重复使用至关重要.
- 实施拟议的解决方案可以减轻挑战,改善数据可访问性和互操作性.
- 对基因组学和转录组学数据在农业中的再利用未来的乐观观点.
相关概念视频
Genomics
35.8K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
35.8K
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Plant Breeding and Biotechnology
18.8K
Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.
18.8K
Transgenic Plants
7.1K
Recombinant DNA technology called transgenesis is often used to add a foreign gene or remove a detrimental gene from an organism. Such genetically modified organisms are called transgenic organisms.
The first-ever transgenic plant was a tobacco plant developed in 1983 that showed resistance against the tobacco mosaic virus. Since then, many transgenic plants have been developed and commercialized for improving the agricultural, ornamental, and horticultural value of a crop plant. Transgenic...
The first-ever transgenic plant was a tobacco plant developed in 1983 that showed resistance against the tobacco mosaic virus. Since then, many transgenic plants have been developed and commercialized for improving the agricultural, ornamental, and horticultural value of a crop plant. Transgenic...
7.1K
Recombinant DNA
93.2K
Overview
93.2K
The Central Dogma
20.4K
The central dogma explains the flow of genetic information from DNA nucleotides to the amino acid sequence of proteins.
RNA is the Missing Link Between DNA and Proteins
In the early 1900s, scientists discovered that DNA stores all the information needed for cellular functions and that proteins perform most of these functions. However, the mechanisms of converting genetic information into functional proteins remained unknown for many years. Initially, it was believed that a single gene is...
RNA is the Missing Link Between DNA and Proteins
In the early 1900s, scientists discovered that DNA stores all the information needed for cellular functions and that proteins perform most of these functions. However, the mechanisms of converting genetic information into functional proteins remained unknown for many years. Initially, it was believed that a single gene is...
20.4K


