细菌限制-修饰系统的非线性调节动态调节了水平基因转移易感性的水平基因转移
Magdalena Djordjevic1,2, Lidija Zivkovic1, Hong-Yu Ou3
1Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, Belgrade11080, Serbia.
Nucleic acids research
|January 16, 2025
概括
第二类限制修改 (R-M) 系统使用调节蛋白来控制细菌防御. 数学建模揭示了M-to-R比率如何变化,影响基因转移和适应.
科学领域:
- 微生物学 微生物学
- 系统生物学 系统生物学
- 生物物理学的生物物理.
背景情况:
- 第二种类型的限制修饰 (R-M) 系统对于细菌对外来DNA的免疫是至关重要的.
- 这些系统涉及限制 (R) 和修饰 (M) 酶的协调表达,通常由蛋白质 (C) 调节.
- R-M酶的平衡影响着水平基因转移 (HGT) 和细菌适应.
研究的目的:
- 开发R-M系统动态的生物物理信息的数学模型.
- 阐明C蛋白在确定M-R比率中的调节作用.
- 在不同的生理条件下分析R-M系统的稳定性和可变性.
主要方法:
- 开发一个新的R-M系统动态的数学模型,最大限度地减少任意参数.
- 对C调节的R-M系统的稳定性图的分析推导.
- 随机模拟用于评估系统的变化和异质性.
主要成果:
- 该模型澄清了M-to-R比率的变化,突出了C蛋白的调节功能.
- 一个稳定性图显示了C调节的R-M系统中单稳定性和双稳定性的条件.
- M-to-R比率的变化与细胞分裂,等离子体复制和生理条件有关.
结论:
- C蛋白在调节细菌防御机制方面发挥着关键作用.
- R-M系统动态影响细菌适应菌体感染,并获得抗生素耐药性等特征.
- 随机模拟表明,R-M系统调节会产生种群异质性,影响细菌进化.
相关概念视频
Bacterial Transformation
55.1K
In 1928, bacteriologist Frederick Griffith worked on a vaccine for pneumonia, which is caused by Streptococcus pneumoniae bacteria. Griffith studied two pneumonia strains in mice: one pathogenic and one non-pathogenic. Only the pathogenic strain killed host mice.
Griffith made an unexpected discovery when he killed the pathogenic strain and mixed its remains with the live, non-pathogenic strain. Not only did the mixture kill host mice, but it also contained living pathogenic bacteria that...
Griffith made an unexpected discovery when he killed the pathogenic strain and mixed its remains with the live, non-pathogenic strain. Not only did the mixture kill host mice, but it also contained living pathogenic bacteria that...
55.1K
Types of Genetic Transfer Between Organisms
27.0K
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
27.0K
Types of RNA
63.1K
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
63.1K
Prokaryotic Transcriptional Activators and Repressors
20.8K
The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...
Transcription of prokaryotic...
20.8K
Genome Size and the Evolution of New Genes
7.9K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
7.9K
Genomic DNA in Prokaryotes
43.4K
The genome of most prokaryotic organisms consists of double-stranded DNA organized into one circular chromosome in a region of cytoplasm called the nucleoid. The chromosome is tightly wound, or supercoiled, for efficient storage. Prokaryotes also contain other circular pieces of DNA called plasmids. These plasmids are smaller than the chromosome and often carry genes that confer adaptive functions, such as antibiotic resistance.
Genomic Diversity in Bacteria
Although bacterial genomes are much...
Genomic Diversity in Bacteria
Although bacterial genomes are much...
43.4K


