在量子化学精度下进行炼金术自由能量计算
Radek Crha1,2, Peter Poliak1,3, Michael Gillhofer1,2
1Institute for Molecular Modeling and Simulation, Department of Material Sciences and Process Engineering, University of Natural Resources and Life Sciences, Vienna, Muthgasse 18, Vienna 1190, Austria.
The journal of physical chemistry letters
|January 17, 2025
概括
机器学习潜力 (MLP) 现在可以在QM/MM模拟中实现化学自由能量扰动 (FEP). 缓冲区神经网络 (BuRNN) 计划将FEP集成到MLP哈密尔顿式中,以加快计算.
科学领域:
- 计算化学的计算化学
- 分子动力学分子动力学
- 机器学习 机器学习
背景情况:
- 机器学习潜力 (MLP) 在混合QM/MM模拟中加速量子力学 (QM) 计算.
- 化学自由能量扰动 (FEP) 在计算上昂贵,在QM层面上具有挑战性.
研究的目的:
- 扩展缓冲区神经网络 (BuRNN) QM/MM 方案,以实现化学自由能量扰动 (FEP).
- 在BuRNN框架内,将FEP计算直接集成到机器学习潜力 (MLP) 汉密尔顿式中.
主要方法:
- 使用了BuRNN QM/MM方案,其中有一个电子极化缓冲区.
- 采用了MLP来预测QM区域的能量及其与缓冲区域的相互作用.
- 直接在MLP哈密尔顿式中实现化学自由能量扰动 (FEP).
主要成果:
- 成功地扩展了BuRNN QM/MM方案以执行化学自由能量扰动 (FEP).
- 证明了FEP计算在MLP/MM层面的可行性.
- 提出了一个概念验证,从水中的甲醇转化为甲的化学转化.
结论:
- 该BuRNN方案有效地将FEP集成到MLP加速的QM/MM模拟中.
- 这种方法显著提高了自由能量计算的效率.
- 通过机器学习潜力,为研究复杂分子系统开辟了新的可能性.
更多相关视频
相关概念视频
Calculating Standard Free Energy Changes
20.6K
The free energy change for a reaction that occurs under the standard conditions of 1 bar pressure and at 298 K is called the standard free energy change. Since free energy is a state function, its value depends only on the conditions of the initial and final states of the system. A convenient and common approach to the calculation of free energy changes for physical and chemical reactions is by use of widely available compilations of standard state thermodynamic data. One method involves the...
20.6K
An Introduction to Free Energy
8.2K
How can we compare the energy that releases from one reaction to that of another reaction? We use a measurement of free energy to quantitate these energy transfers. Scientists call this free energy Gibbs free energy (abbreviated with the letter G) after Josiah Willard Gibbs, the scientist who developed the measurement. According to the second law of thermodynamics, all energy transfers involve losing some energy in an unusable form such as heat, resulting in entropy. Gibbs free energy...
8.2K
The Nernst Equation
40.1K
Nonstandard Reaction Conditions
The interconnection between standard cell potentials and various thermodynamic parameters such as the standard free energy change ΔG° and equilibrium constant K has been previously explored. For example, a redox reaction involving zinc(II) and tin(II) ions at 1 M concentration with Eºcell = +0.291 V and ΔG° = −56.2 kJ is spontaneous.
The interconnection between standard cell potentials and various thermodynamic parameters such as the standard free energy change ΔG° and equilibrium constant K has been previously explored. For example, a redox reaction involving zinc(II) and tin(II) ions at 1 M concentration with Eºcell = +0.291 V and ΔG° = −56.2 kJ is spontaneous.
40.1K
Free Energy Changes for Nonstandard States
10.8K
The free energy change for a process taking place with reactants and products present under nonstandard conditions (pressures other than 1 bar; concentrations other than 1 M) is related to the standard free energy change according to this equation:
where R is the gas constant (8.314 J/K·mol), T is the absolute temperature in kelvin, and Q is the reaction quotient. This equation may be used to predict the spontaneity of a process under any given set of conditions.
Reaction Quotient...
where R is the gas constant (8.314 J/K·mol), T is the absolute temperature in kelvin, and Q is the reaction quotient. This equation may be used to predict the spontaneity of a process under any given set of conditions.
Reaction Quotient...
10.8K
Chemical Equilibria: Systematic Approach to Equilibrium Calculations
626
Equilibrium calculations for systems involving multiple equilibria are often complex. For example, to calculate the solubility of a sparingly soluble salt in an aqueous solution in the presence of a common ion, one must consider all the equilibria in this solution. Calculations for these systems can be complicated and tedious, so a systematic approach with a series of steps is often helpful. The process is detailed below.
The first step is to identify all the chemical reactions involved, The...
The first step is to identify all the chemical reactions involved, The...
626
Free Energy
47.7K
Free energy—abbreviated as G for the scientist Gibbs who discovered it—is a measurement of useful energy that can be extracted from a reaction to do work. It is the energy in a chemical reaction that is available after entropy is accounted for. Reactions that take in energy are considered endergonic and reactions that release energy are exergonic. Plants carry out endergonic reactions by taking in sunlight and carbon dioxide to produce glucose and oxygen. Animals, in turn, break...
47.7K


