功能性cis-regulatory元素的分析揭示了 Gonadal 发育中的新型转录性调节机制
Shizuka Kirino1, Ryuichi Nakagawa1, Maki Gau1,2
1Department of Pediatrics and Developmental Biology, Institute of Science Tokyo, Tokyo, Japan.
概括
增强剂衍生转录 (eRNA) 在小鼠淋巴体发育过程中揭示了 cis 调节元素的动态变化. 丸发育显示出比卵巢发育更大的转录调节网络转移,识别了新的转录因子.
科学领域:
- 基因组学就是基因组学.
- 发展生物学 发展生物学
- 基因规则 基因规则
背景情况:
- 增强剂衍生转录 (eRNAs) 是活性 cis-调节元素 (CREs) 的关键指标.
- eRNA水平与基因素修饰相关,有助于理解基因调节网络.
研究的目的:
- 为了研究小鼠淋巴体发育过程中CREs的变化.
- 为了比较胚胎和产后发育期间CRE活动的性别特异性.
主要方法:
- 从E13.5,E16.5和P0.0处的记者小鼠菌株收集的淋巴体WT1阳性细胞.
- 利用基因表达 (CAGE) 的封顶分析来分析转录起点 (TSSs).
- 在性别和发育阶段之间比较基因间双向RNA水平 (假定的eRNA).
主要成果:
- 干基因RNA的TSS概况在丸体细胞中比在卵巢体细胞中更显著地发生了变化.
- 这表明,在丸发育过程中,转录调节网络发生了更广泛的转移.
- 鉴定了NR4A,EGR和TCF3家族作为潜在的新型转录因子,对生殖腺发育至关重要.
结论:
- 在识别活跃的CREs和理解转录调节方面,eRNA非常有价值.
- 这种方法提供了对男性和女性独特的生殖腺发育过程的洞察.
相关概念视频
Cis-regulatory Sequences
9.7K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.7K
Master Transcription Regulators
6.9K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.9K
Development of the Sexual Organs in the Embryo and Fetus
523
Development of the reproductive organs in an embryo starts from a bipotential state. This means the early embryo can develop either male or female reproductive organs. The formation of these organs begins with the growth of gonadal ridges that arise from the intermediate mesoderm during the fifth week of development.
Near the gonadal ridges, two duct systems are present: the mesonephric ducts (Wolffian ducts) and paramesonephric ducts (Müllerian ducts). These ducts form the basis for the...
Near the gonadal ridges, two duct systems are present: the mesonephric ducts (Wolffian ducts) and paramesonephric ducts (Müllerian ducts). These ducts form the basis for the...
523
Gonadal and Placental Hormones
1.3K
The gonads, namely the testes in males and the ovaries in females, are pivotal in producing gonadal hormones that orchestrate the intricate processes of sexual development and reproduction.
In males, testosterone is the primary gonadal androgen. It plays a central role in the maturation of male reproductive organs — the penis and testes. Additionally, testosterone is instrumental in the development of secondary sexual characteristics — a deep voice as well as facial and pubic hair...
In males, testosterone is the primary gonadal androgen. It plays a central role in the maturation of male reproductive organs — the penis and testes. Additionally, testosterone is instrumental in the development of secondary sexual characteristics — a deep voice as well as facial and pubic hair...
1.3K
General Transcription Factors
5.2K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.2K
RNA Polymerase II Accessory Proteins
9.1K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.1K


