使用键价值法重新考虑VFe蛋白中的P集群:向其电子转移和质子化方向
Zhen Lang Xie1, Wan Ting Jin2, Zhao Hui Zhou1
1State Key Laboratory for Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China.
Acta crystallographica. Section D, Structural biology
|January 22, 2025
概括
在VFe蛋白中的P集群在P1+和PN形式中保持一致的氧化状态. 结构分析揭示了氧化过程中胺基基的质子化和特定的铁硫键变化.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 生物有机化学 生物有机化学
背景情况:
- 基酶酶对于生物固定至关重要.
- 基酶中的P集群是复杂的铁硫集群,具有重要的催化作用.
- 了解P集群的电子和结构性质是破译酶机制的关键.
研究的目的:
- 为了确定VFe蛋白中的P1+集群的正式氧化状态和电子结构.
- 研究P集群氧化过程中关键残留物的结构变化和质子化状态.
- 为了比较P1+和PN状态,以阐明酶活性的机制.
主要方法:
- 使用债券价值和 (BVS) 方法对P集群的统计分析.
- 使用来自蛋白质数据库 (PDB) 的高分辨率晶体数据.
- 对键距离和协调环境的比较分析.
主要成果:
- P1+星团表现出2Fe3+6Fe2+的正式氧化状态,具有显著的电子外定位,反映了PN状态.
- -153血清残留的基团在P1+和PN两个中都有质子.
- 从PN到P1+的氧化涉及Fe6-S1键裂变和对β-153血清基组的新协调.
结论:
- 在VFe蛋白中的P集群保持稳定的氧化状态,尽管有功能转换.
- 结构重组,包括血质子和改变的铁协调,伴随着P集群氧化.
- 这些发现提供了对酶中催化循环和电子转移过程的见解.
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