线粒体基因组洞察进化和基因调控在南方虫中
Jipeng Cui1,2, Qianhui Yang1, Jiyue Zhang1
1College of Life Sciences, Capital Normal University, Haidian District, Beijing 100048, China.
International journal of molecular sciences
|January 25, 2025
概括
这项研究介绍了Phragmites australis的完整线粒基因组组,揭示了其独特的结构和基因含量. 这些发现提供了对这种适应性草物种遗传基础的关键见解.
科学领域:
- 植物基因组学 植物基因组学
- 分子进化是分子进化的过程.
- 生物信息学是一种生物信息学.
背景情况:
- 弗拉格米特 (Phragmites australis) 是一种全球分布的多年草,具有重要的生态和经济价值.
- 了解它的遗传构成对于欣赏其适应恶劣环境的能力至关重要.
研究的目的:
- 为了执行一个完整的组装和注释的Pragmites australis mitogenome.
- 研究组织特异性基因表达和线粒基因组的进化特征.
主要方法:
- 用于基因组数据采集的PacBio和BGI测序平台.
- 用于差异基因表达分析的RNA测序 (RNAseq).
- 生物信息分析包括重复分析,Ka/Ks比率,密码子使用,基因转移,RNA编辑和家族遗传分析.
主要成果:
- 一个完整的501,134 bp多分支线基因组,由两个圆形染色体组成.
- 鉴定了一种简化的酸脱酶4基因,通常在草中转移.
- 发现了特定于组织的线粒体基因,揭示了能量和基因调节.
结论:
- 这项研究为Phragmites australis的线粒体基因组表征提供了全面的分子资源.
- 为未来人口遗传学研究和对该物种和Arundinaceae家族的进化研究提供了基础.
相关概念视频
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes
12.0K
The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
12.0K
Gene Evolution - Fast or Slow?
7.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.0K
Export of Mitochondrial and Chloroplast Genes
3.6K
A eukaryotic cell can have up to three different types of genetic systems: nuclear, mitochondrial, and chloroplast. During evolution, organelles have exported many genes to the nucleus; this transfer is still ongoing in some plant species. Approximately 18% of the Arabidopsis thaliana nuclear genome is thought to be derived from the chloroplast’s cyanobacterial ancestor, and around 75% of the yeast genome derived from the mitochondria’s bacterial ancestor. This export has occurred...
3.6K
Animal Mitochondrial Genetics
7.4K
Among all the organelles in an animal cell, only mitochondria have their own independent genomes. Animal mitochondrial DNA is a double-stranded, closed-circular molecule with around 20,000 base pairs. Mitochondrial DNA is unique in that one of its two strands, the heavy, or H, -strand is guanine rich, whereas the complementary strand is cytosine rich and called the light, or L, -strand. Compared to nuclear DNA, mitochondrial DNA has a very low percentage of non-coding regions and is marked by...
7.4K
Evolutionary Relationships through Genome Comparisons
5.7K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.7K
Overview of Metabolism
29.4K
Living cells constantly carry out various chemical reactions which are necessary for their proper functioning. These reactions are interlinked to one another via multiple pathways. The collection of these chemical reactions is known as metabolism.
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
29.4K


