基于流量的体外方法来计算翻译核糖体和翻译延长率
Mina O Seedhom1, Devin Dersh2, Jonathan W Yewdell3
1Diabetes Center of Excellence, Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Bio-protocol
|January 28, 2025
概括
这项研究提出了一种新的方法来测量转化核糖体及其mRNA传输速率 in vivo. 该技术使用纯基化,哈林顿因和循环赫西米德,使流细胞计分析能够进行准确的量化.
科学领域:
- 分子生物学分子生物学
- 细胞生物学 细胞生物学
- 生物化学 生物化学
背景情况:
- 蛋白质合成是快速分裂细胞中一个关键的,能源密集的过程.
- 目前用于量化翻译核糖体及其mRNA传输速率的现有方法在技术上要求很高,成本很高,并且提供了关于翻译状态的有限信息.
- 准确测量核糖体活动对于理解细胞功能和疾病至关重要.
研究的目的:
- 开发和验证一种新的,简化的协议,用于定量转化核糖体数和mRNA传输速率 in vivo.
- 使用流细胞计,使得单个细胞内的核糖体停滞的检测成为可能.
- 为研究蛋白质合成动态提供一种更容易获得和更有效的方法.
主要方法:
- 开发一项涉及向小鼠静脉注射纯化剂,哈林顿因和环胺的协议.
- 细胞的ex vivo固定和透,然后进行流细胞计分析.
- 使用胺特异性抗体量化翻译核糖体数量和传输速率.
主要成果:
- 开发的协议允许在混合单细胞制剂中对翻译核糖体进行相对量化.
- 该方法可以在混合单细胞制剂中相对量化体内核糖体过渡速率.
- 该协议能够在体内检测核糖体停滞.
结论:
- 这种新的方法提供了一种可靠且易于使用的方法来测量体内翻译核糖体数量和mRNA传输速率.
- 该技术有助于研究蛋白质合成动态和核糖体在各种生物环境中的停滞.
- 这一进步为研究人员研究细胞能量和快速分裂细胞提供了宝贵的工具.
相关概念视频
Ribosome Profiling
3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K
Improving Translational Accuracy
8.6K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
8.6K
Leaky Scanning
5.1K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.1K
Initiation of Translation
30.4K
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
30.4K


