定向进化在设计酶中选择性地使用量子道――一项结合理论和实验研究
Kseniia Korchagina1, Sree Ganesh Balasubramani2, Jordan Berreur3
1Department of Chemistry and Biochemistry, University of Arizona, 1306 East University Boulevard, Tucson, Arizona 85721, United States.
The journal of physical chemistry. B
|January 28, 2025
概括
量子道在酶催化中扮演着很小的角色,特别是在莫里塔-贝利斯-希尔曼反应中C-H键裂变期间的质子转移中. 实验室进化可以通过改变反应来影响这种量子贡献.
科学领域:
- 生物化学和物理化学
- 酶催化酶的催化作用
- 在生物系统中的量子力学.
背景情况:
- 自然酶通过催化作用显著加快反应.
- 量子道是提议的一种机制,用于提高某些酶反应的速度.
- 了解进化对道机制的贡献是有趣的.
研究的目的:
- 研究质子道化在催化莫里塔-贝利斯-希尔曼 (MBH) 反应的工程酶中的作用.
- 确定量子道是否有助于降低质子转移的自由能量.
- 将计算结果与实验动态同位素效应 (KIE) 数据进行比较.
主要方法:
- 对于MBH反应的酶的理论设计和实验室演变.
- 在路径采样计算中使用经典和中心分子动力学.
- 对质子转移自由能量的分析和与实验KIE的比较.
主要成果:
- 观察到量子道的适度参与.
- 当实验室进化导致更高的经典自由能源障碍时,道的贡献更为明显.
- 计算结果与KIE实验数据保持一致.
结论:
- 量子道可以在酶催化反应中发挥作用,特别是当其他进化优化增加化学屏障时.
- 该研究提供了关于酶进化和量子效应之间的相互作用的见解.
- 这项研究有助于了解人工酶催化机制.
相关概念视频
Catalytically Perfect Enzymes
3.9K
The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
Most enzymes...
Most enzymes...
3.9K
Induced-fit Model
80.2K
Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
80.2K
Introduction to Mechanisms of Enzyme Catalysis
7.9K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
7.9K


