多基因组数据库:一个全面的多基因组数据库用于基因组学
Mingjiang Huang1, Jiahe Sun1, Jian Wang2
1Southwest University, Chongqing, 402460, PR China.
Poultry science
|January 28, 2025
概括
一个新的多基因组数据库 (GMD) 集成了的各种基因组数据. 本资源通过提供统一获取遗传信息和分析工具来增强基因组学研究.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 动物科学动物科学
背景情况:
- 多omics研究揭示了基因表达和基因组变异与的经济重要特征相关.
- 现有的基因组数据很大,但缺乏统一的整合平台.
研究的目的:
- 开发一个全面的,统一的数据库,用于的多omics数据.
- 为了促进简化搜索,分析和可视化用于研究的遗传信息.
主要方法:
- 开发了具有统一界面的多组数据库 (GMD).
- 集成分析工具,包括GBrowse和BLAST.
- 包括关于表型特征,基因序列,表达特征,基因组变异和基因家族的数据.
主要成果:
- GMD为各种的遗传数据提供了一个集中资源.
- 该数据库通过集成工具能够有效访问目标基因信息.
- 它支持对基因结构,同质性和对线性进行可视化.
结论:
- 该GMD作为一个多功能在线存储库,以推进生物和多omics研究.
- 它通过整合数据和分析工具来提高基因组研究的效率和生产率.
- 该平台有可能通过深度学习等先进方法来加速基因组学方面的发现.
相关概念视频
Genomics
35.8K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
35.8K
Multi-species Conserved Sequences
3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K
Transgenic Organisms
30.9K
Overview
30.9K
Genomic DNA in Eukaryotes
46.6K
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
46.6K
Genome Annotation and Assembly
18.8K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.8K
Next-generation Sequencing
87.2K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
87.2K


