研究计算机辅助合成规划的效率
Peter B R Hartog1,2, Annie M Westerlund1, Igor V Tetko2
1Molecular AI, Discovery Sciences, R&D, AstraZeneca, Pepparedsleden 1, 431 83 Mölndal, Sweden.
Journal of chemical information and modeling
|January 31, 2025
概括
为化学合成规划优化机器学习模型是关键. 虽然更快的单步预测很重要,但这些预测的多样性和信心更显著地影响了整体的多步搜索效率.
科学领域:
- 计算化学是一种计算化学.
- 人工智能在药物发现中的作用
- 机器学习用于合成规划.
背景情况:
- 机器学习 (ML) 模型对于有效的化学合成路径生成至关重要.
- 当前的回复合成模型往往太慢,无法在实践中应用.
- 减少ML模型的推断时间和碳足迹是一个重大挑战.
研究的目的:
- 为了减少回归合成的Chemformer模型的推断时间.
- 研究替代变压器架构,知识蒸 (KD) 和超参数优化.
- 评估这些优化对单步和多步搜索效率的影响.
主要方法:
- 评估了与知识蒸 (KD) 密切相关的变压器架构.
- 调查的基于特征和基于响应的KD.
- 基于推断时间和模型准确性的优化超参数.
- 评估了单步预测速度和多步搜索效率.
主要成果:
- 在使用KD时,替代变压器架构的性能不佳.
- 减少模型尺寸和提高单步速度是重要的,但不够.
- 多步骤搜索效率更多地受到单步预测的多样性和信心的影响.
- 仅仅知识蒸并没有显著提高多步效率.
结论:
- 进一步的研究应该将KD与其他技术相结合,以改善合成规划.
- 反合成中的多步搜索效率是复杂的,并且受到超出单步模型速度的因素的影响.
- 在基于蒙特卡洛的回复合成中平衡勘探和开采是至关重要的.
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