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相关概念视频

Chromatin Packaging02:21

Chromatin Packaging

15.1K
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter? 
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
15.1K
Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

5.4K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
5.4K
Genomic DNA in Eukaryotes00:58

Genomic DNA in Eukaryotes

46.6K
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
46.6K
Lampbrush Chromosomes01:51

Lampbrush Chromosomes

7.8K
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops...
7.8K
Chromatin Immunoprecipitation- ChIP02:36

Chromatin Immunoprecipitation- ChIP

11.0K
Chromatin immunoprecipitation, or ChIP, is an antibody-based technique used to identify sites on DNA that bind to transcription factors of interest or histone proteins. It also helps determine the type of histone modifications such as acetylation, phosphorylation, or methylation.
Types of ChIP
ChIP can be divided into two types - X-ChIP and N-ChIP. X-ChIP involves in vivo cross-linking of histones and regulatory proteins to DNA, fragmenting the DNA by sonication, and isolating the protein-DNA...
11.0K
Nucleosome Remodeling02:54

Nucleosome Remodeling

8.9K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
8.9K

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相关实验视频

Updated: May 28, 2025

CRISPR-Mediated Reorganization of Chromatin Loop Structure
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CRISPR-Mediated Reorganization of Chromatin Loop Structure

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全基因组对染色质循环的绝对量化.

James M Jusuf1,2,3,4, Simon Grosse-Holz5,6, Michele Gabriele1,2,3,4

  • 1Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

bioRxiv : the preprint server for biology
|February 12, 2025
PubMed
概括

研究人员使用校准的Micro-C.量化了绝对色素循环概率. 他们发现染色质环很少见,大多数发生在低频率,挑战了3D基因组学中以前的假设.

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Chromatin Interaction Analysis with Paired-End Tag Sequencing ChIA-PET for Mapping Chromatin Interactions and Understanding Transcription Regulation
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Chromatin Interaction Analysis with Paired-End Tag Sequencing ChIA-PET for Mapping Chromatin Interactions and Understanding Transcription Regulation

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Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C
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Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C

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Chromatin Interaction Analysis with Paired-End Tag Sequencing ChIA-PET for Mapping Chromatin Interactions and Understanding Transcription Regulation
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科学领域:

  • 基因组学就是基因组学.
  • 分子生物学分子生物学
  • 细胞生物学 细胞生物学

背景情况:

  • 像Hi-C和Micro-C这样的3D基因组学技术可以识别染色质循环.
  • 这些方法相对测量相互作用概率,限制定量见解.
  • 了解循环频率对于基因调节研究至关重要.

研究的目的:

  • 开发一种方法来绝对量化染色质循环概率.
  • 为了确定染色体循环的全基因组频率.
  • 为了比较不同类型的染色质环的概率.

主要方法:

  • 在小鼠胚胎干细胞中使用实时成像校准的Micro-C数据.
  • 对于超过36000个染色体循环的量化绝对循环概率.
  • 分析了CTCF-CTCF和cis-regulatory元素循环之间的循环强度的差异.

主要成果:

  • 建立了全基因组绝对循环量化.
  • 证明循环状态通常很少见,平均概率为2.3%.
  • 发现CTCF-CTCF循环 (3.2%) 比cis-regulatory元素循环 (1.1%) 强.

结论:

  • 开发了一种绝对色素循环量化的方法.
  • 表明染色体循环在全基因组中发生的概率很低.
  • 这些发现将实时成像观察概括为整个基因组,并可能适用于人类细胞.