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相关概念视频

Transfer RNA Synthesis02:36

Transfer RNA Synthesis

11.8K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
11.8K
tRNA Activation02:26

tRNA Activation

18.9K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
18.9K
RNA-seq03:21

RNA-seq

9.8K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.8K
Ribosome Profiling02:24

Ribosome Profiling

3.5K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.5K
RNA Structure01:19

RNA Structure

4.6K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.6K

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相关实验视频

Updated: May 28, 2025

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
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A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq

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使用tRAX和tDRnamer分析,可视化和注释tRNA衍生RNA.

Patricia P Chan1, Andrew D Holmes1, Todd M Lowe1

  • 1Department of Biomolecular Engineering, University of California, Santa Cruz, CA, United States.

Methods in enzymology
|February 14, 2025
PubMed
概括

本研究介绍了tRAX和tDRnamer,这是用于分析tRNA衍生RNA (tDR) 的生物信息学工具. 这些工具有助于研究人员理解tDR表达,差异和从测序数据的修改.

科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 基因组学就是基因组学.

背景情况:

  • tRNA衍生RNAs (tDRs) 是具有跨生物体显著调节功能的小RNA分子.
  • 鉴定和描述tDR是具有挑战性的,因为它们的庞大数量和复杂性.
  • 高通量RNA测序是tDR发现的主要方法.

研究的目的:

  • 介绍一下tRAX,一个用于分析tDRs的全面软件管道.
  • 为了能够准确估计tDR丰度和差异表达.
  • 为了促进从测序数据中推断RNA修饰的推断.

主要方法:

  • 开发和应用tRAX软件管道.
  • 使用原始小RNA测序数据作为输入.
  • 使用tDRnamer进行自动化tDR命名和注释的演示.

主要成果:

  • tRAX为tDR提供端到端分析,包括丰度估计和差异表达.
  • tDRnamer提供基于源tRNA的标准化命名和注释.
  • 这些工具可以更深入地探索tDR特征和生物模式.
关键词:
生物信息学是一种生物信息学.基因组RNA的修改 基因组RNA的改变小RNA测序小RNA测序是一个很好的方法.TDR转录表达式的表达方式由TRNA衍生的RNA注释

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TRAP-rc, Translating Ribosome Affinity Purification from Rare Cell Populations of Drosophila Embryos
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结论:

  • tRAX和tDRnamer是tDR研究的重要生物信息学工具.
  • 这些工具简化了从测序数据中对tDRs的分析.
  • 该软件有助于更好地了解tDR的角色和复杂性.