用子基因组添加剂和表观模型改善六倍体小麦的基因组选择
Augusto Tessele1, David O González-Diéguez2, José Crossa2
1Department of Agronomy, Kansas State University, Manhattan, KS 66506-5500, USA.
G3 (Bethesda, Md.)
|February 15, 2025
概括
了解小麦遗传学,这项研究模拟了对谷物产量的添加和表观效应. 结合非添加性遗传效应,基因组预测准确度提高了3%,有助于小麦育种计划.
科学领域:
- 植物遗传学 植物遗传学
- 农业科学 农业科学
- 定量遗传学 是一种定量遗传学.
背景情况:
- 小麦育种的目的是开发出适合特定环境的优质品种.
- 基因组估计育种值 (GEBV) 传统上侧重于附加性遗传效应,往往忽视了在小麦等全聚类中至关重要的非附加性效应.
研究的目的:
- 模拟添加剂和添加剂对添加剂的表观效应,以阐明小麦谷物产量的遗传结构.
- 为了提高小麦育种中全基因组预测的准确性.
主要方法:
- 利用K州小麦育种计划 (2016年,2018年) 的3740条F5:6实验线的数据集.
- 使用全基因组和亚基因组标记数据计算共变矩阵.
- 采用自然和直角相互作用方法来估计添加和表观效应的方差元件.
主要成果:
- 将表观效应纳入添加模型增加了总遗传变异,并减少了模型偏差.
- 亚基因组效应分析显示,高整基因组效应通常是由于将子基因组与中等到高效应结合而产生的.
- 模拟表观症改善了基因组预测准确度约3%.
结论:
- 非添加性遗传效应,特别是表皮病,在小麦谷物产量结构中发挥着重要作用.
- 将表观效应集成到基因组预测模型中,有可能在小麦育种中取得重大遗传收益.
- 识别具有互补子基因组效应的亲系可以优化交叉策略.
更多相关视频
08:27Large-Scale Multi-Omics Genome-Wide Association Studies Mo-GWAS: Guidelines for Sample Preparation and Normalization
Published on: July 27, 2021
3.5K
09:43Author Spotlight: Streamlining Rice Breeding with CRISPR/Cas for Obtaining Optimal Phenotypic and Agronomic Traits
Published on: January 3, 2025
2.1K
相关概念视频
Epistasis Analysis
4.9K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
4.9K
Frequency-dependent Selection
21.7K
When the fitness of a trait is influenced by how common it is (i.e., its frequency) relative to different traits within a population, this is referred to as frequency-dependent selection. Frequency-dependent selection may occur between species or within a single species. This type of selection can either be positive—with more common phenotypes having higher fitness—or negative, with rarer phenotypes conferring increased fitness.
21.7K
What is Genetic Engineering?
73.3K
Overview
73.3K
Genome-wide Association Studies-GWAS
12.3K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
12.3K
Epistasis
45.5K
In addition to multiple alleles at the same locus influencing traits, numerous genes or alleles at different locations may interact and influence phenotypes in a phenomenon called epistasis. For example, rabbit fur can be black or brown depending on whether the animal is homozygous dominant or heterozygous at a TYRP1 locus. However, if the rabbit is also homozygous recessive at a locus on the tyrosinase gene (TYR), it will have an unshaded coat that appears white, regardless of its TYRP1...
45.5K
Plant Breeding and Biotechnology
18.8K
Crop cultivation has a long history in human civilization, with records showing the cultivation of cereal plants beginning at around 8000 BC. This early plant breeding was developed primarily to provide a steady supply of food.
18.8K
