非编码的超保存元素在人类癌症中的突变场景和功能影响
Recep Bayraktar1,2, Yitao Tang2,3, Mihnea P Dragomir4,5,6,7
1Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
非编码超保存元素 (ncUCEs) 的体质变化在癌症中很常见. 这些ncUCEs调节瘤抑制和瘤基因,影响细胞增殖和miRNA处理.
科学领域:
- 基因组学就是基因组学.
- 癌症生物学 癌症生物学
- 分子遗传学 分子遗传学
背景情况:
- 遗传学上极度保存的元素 (UCE),特别是非编码的UCE (ncUCE),是关键的基因组区域.
- 它们在各种癌症中的特定作用和突变模式尚不清楚.
研究的目的:
- 系统地分析癌症中UCEs的突变格局.
- 研究ncUCE在癌症发育和进展中的功能意义.
主要方法:
- 来自3000多名癌症患者的13,736个UCE的全基因组和向测序.
- 在结直肠癌细胞中使用CRISPR淘汰屏幕.
- 在体外和体内生物功能测定.
主要成果:
- 在多种癌症类型中经常观察到 ncUCE 的体质变化.
- 失去特定的ncUCEs显著影响癌细胞增殖.
- 已识别的ncUCEs作为瘤抑制剂的增强剂 (例如,ARID1B) 和瘤基因的沉声器 (例如,RPS13) 的功能.
- 包括miR-142在内的ncUCE定位的microRNAs (miRNAs) 中经常发生的突变会影响miRNA处理和表达.
结论:
- ncUCE在癌症中起着重要且多样化的调节作用.
- 改变的ncUCEs通过各种机制促进瘤发生,包括影响基因表达和miRNA成熟.
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